MirGeneDB ID | Efe-Mir-10-P2k |
Family name |
MIR-10 (all species) |
Seed |
ACCCGUA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-10-P1i
Efe-Mir-10-P1j
Efe-Mir-10-P2g
Efe-Mir-10-P2h
Efe-Mir-10-P2i
Efe-Mir-10-P2j
Efe-Mir-10-P3g
Efe-Mir-10-P3h
Efe-Mir-10-P3i
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Efe-Mir-10-P6
Efe-Mir-10-P7
|
Orthologues |
Aae-Mir-10-P2
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P2-v2
Bge-Mir-10-P2
Bla-Mir-10-P2-v1
Bla-Mir-10-P2-v2
Bpl-Mir-10-P2
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cgi-Mir-10-P2
Cin-Mir-10-P2
Cte-Mir-10-P2
Dan-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Isc-Mir-10-P2
Lan-Mir-10-P2
Lgi-Mir-10-P2
Npo-Mir-10-P2
Nve-Mir-10
Obi-Mir-10-P2
Ovu-Mir-10-P2
Pfl-Mir-10-P2
Pmi-Mir-10-P2
Sko-Mir-10-P2
Tca-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Efe_combined) |
Efet.01.530201: 300-362 [-]
|
Precursor (pre-Mir +30nt flank) |
UAAGAAGAAAUCCUUCUGAAUGGUAACAUAAACCCGUACGCUUGAACUUGUGAUGAAAAUGUUCAAAACCACAAGUCGAGUGCUGCGGGUCUUGUGUCGCCAAGUUGACCAACACCAUUCAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UAAGAAGAAAUCCUUCUGAA- UA - -| A AUGAAAAU
UGG ACAUAA ACCCGUA CGCUUGA CUUGUG \
ACC UGUGUU UGGGCGU GUGAGCU GAACAC G
AAACUUACCACAACCAGUUGA GC C C^ - CAAAACUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-10-P2k_5p |
mirBase accession | None |
Sequence |
0- AACCCGUACGCUUGAACUUGUG -22
Get sequence
|
Star sequence |
Efe-Mir-10-P2k_3p* |
mirBase accession | None |
Sequence |
41- CAAGUCGAGUGCUGCGGGUCUU -63
Get sequence
|