Mir-10-P3

MirGeneDB ID

Rph-Mir-10-P3

Family name

MIR-10 (all species)

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Rph-Mir-10-P1 Rph-Mir-10-P2 Rph-Mir-10-P5 Rph-Mir-10-P6

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Aca-Mir-10-P3c Aca-Mir-10-P3d Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Ami-Mir-10-P3c Ami-Mir-10-P3d Asp-Mir-10 Asu-Mir-10-P3 Ava-Mir-10-P3v Ava-Mir-10-P3w Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Bta-Mir-10-P3c Bta-Mir-10-P3d Cbr-Mir-10-P3m Cbr-Mir-10-P3n Cel-Mir-10-P3m Cel-Mir-10-P3n Cfa-Mir-10-P3b Cfa-Mir-10-P3c Cfa-Mir-10-P3d Cin-Mir-10-P3 Cja-Mir-10-P3b Cja-Mir-10-P3c Cja-Mir-10-P3d Cli-Mir-10-P3c Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3b Cpi-Mir-10-P3c Cpi-Mir-10-P3d Cpo-Mir-10-P3b Cpo-Mir-10-P3c Cpo-Mir-10-P3d Csc-Mir-10-P3r1 Csc-Mir-10-P3r2 Cte-Mir-10-P3 Dan-Mir-10-P3 Dgr-Mir-10-P3w Dgr-Mir-10-P3x Dgr-Mir-10-P3y Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dno-Mir-10-P3d Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d1 Dre-Mir-10-P3d2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Ebu-Mir-10-P3e Ebu-Mir-10-P3f Eca-Mir-10-P3b Eca-Mir-10-P3c Eca-Mir-10-P3d Efe-Mir-10-P3g Efe-Mir-10-P3h Efe-Mir-10-P3i Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Ete-Mir-10-P3c Ete-Mir-10-P3d Gga-Mir-10-P3c Gga-Mir-10-P3d Gja-Mir-10-P3b Gja-Mir-10-P3c Gja-Mir-10-P3d Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Hsa-Mir-10-P3c Hsa-Mir-10-P3d Isc-Mir-10-P3 Laf-Mir-10-P3b Laf-Mir-10-P3c Laf-Mir-10-P3d Lan-Mir-10-P3 Lch-Mir-10-P3b Lch-Mir-10-P3c Lch-Mir-10-P3d Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Loc-Mir-10-P3c Loc-Mir-10-P3d Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mal-Mir-10-P3c2 Mal-Mir-10-P3d1 Mal-Mir-10-P3d2 Mdo-Mir-10-P3c Mdo-Mir-10-P3d Mgi-Mir-10-P3 Mml-Mir-10-P3b Mml-Mir-10-P3c Mml-Mir-10-P3d Mmr-Mir-10-P3b Mmr-Mir-10-P3c Mmr-Mir-10-P3d Mmu-Mir-10-P3b Mmu-Mir-10-P3c Mmu-Mir-10-P3d Mom-Mir-10-P3 Mun-Mir-10-P3b Mun-Mir-10-P3c Mun-Mir-10-P3d Nag-Mir-10-P3-v1 Neu-Mir-10-P3c Neu-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3b Oan-Mir-10-P3c Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3b Ocu-Mir-10-P3c Ocu-Mir-10-P3d Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pab-Mir-10-P3c Pab-Mir-10-P3d Pau-Mir-10-P3 Pbv-Mir-10-P3b Pbv-Mir-10-P3c Pbv-Mir-10-P3d Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Pfl-Mir-10-P3j1 Pfl-Mir-10-P3j2 Pfl-Mir-10-P3k Ple-Mir-10-P3 Pma-Mir-10-P3o1 Pma-Mir-10-P3o2 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rno-Mir-10-P3c Rno-Mir-10-P3d Sha-Mir-10-P3b Sha-Mir-10-P3c Sha-Mir-10-P3d Sko-Mir-10-P3 Sma-Mir-10-P3o3 Sma-Mir-10-P3o4 Sma-Mir-10-P3o5 Sme-Mir-10-P3s Sme-Mir-10-P3t Sme-Mir-10-P3u Snu-Mir-10-P3 Spt-Mir-10-P3b Spt-Mir-10-P3c Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3b Sto-Mir-10-P3c Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3c Tgu-Mir-10-P3d Tni-Mir-10-P3b2 Tni-Mir-10-P3d1 Tni-Mir-10-P3d2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xla-Mir-10-P3d3 Xla-Mir-10-P3d4 Xtr-Mir-10-P3b Xtr-Mir-10-P3c Xtr-Mir-10-P3d

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Ruditapes_GCA_009026015)

CM018531.1: 24954546-24954609 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3)

Mir-10-P3 CM018531.1: 24954546-24954609 [-] Ensembl
Let-7 CM018531.1: 24991230-24991295 [-] Ensembl
Mir-10-P2 CM018531.1: 24992246-24992307 [-] Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

UGAGCACACAAGAAUACAACCUUUUCGUUAUCCCUGAGACCAUAACUUGAGGACCAUAGACUGGUUGUGUGUCCCAAGUUGUAGUUCAGGUGCAAGGUGAAGGUCAUUUAGCGACAAUGUGUGC

Get precursor sequence

Structure

        10          20        30        40        50        60  
UGAGCACACAAGAAUACA--|     UCGUUAUC      A C        A    CAUAGAC 
                    ACCUUU        CCUGAG C AUAACUUG GGAC       U
                    UGGAAG        GGACUU G UGUUGAAC CCUG       G
CGUGUGUAACAGCGAUUUAC^     UGGAACGU      - A        -    UGUGUUG 
  120       110       100        90         80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-10-P3_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCAUAACUUGAGGAC -24

Get sequence

Star sequence

Rph-Mir-10-P3_3p*

mirBase accession

None

Sequence

42- CCCAAGUUGUAGUUCAGGUGCA -64

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