Mir-10-P3b

MirGeneDB ID

Hsa-Mir-10-P3b

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-125a

Paralogues

Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Hsa-Mir-10-P1c-v1 Hsa-Mir-10-P1c-v2 Hsa-Mir-10-P2b Hsa-Mir-10-P2c Hsa-Mir-10-P2d Hsa-Mir-10-P3c Hsa-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Ami-Mir-10-P3b Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cgi-Mir-10-P3 Cin-Mir-10-P3 Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gmo-Mir-10-P3b1 Gmo-Mir-10-P3b2 Isc-Mir-10-P3 Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b1 Mal-Mir-10-P3b2 Mml-Mir-10-P3b Mmu-Mir-10-P3b Mun-Mir-10-P3b Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ovu-Mir-10-P3 Pbv-Mir-10-P3b Pmi-Mir-10-P3 Rno-Mir-10-P3b Sha-Mir-10-P3b Sko-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(hg38)

chr19: 51693268-51693327 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b)

Mir-10-P2b chr19: 51692618-51692677 [+] UCSC Ensembl
Let-7-P1b chr19: 51692793-51692859 [+] UCSC Ensembl
Mir-10-P3b chr19: 51693268-51693327 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCGCACACCAUGUUGCCAGUCUCUAGGUCCCUGAGACCCUUUAACCUGUGAGGACAUCCAGGGUCACAGGUGAGGUUCUUGGGAGCCUGGCGUCUGGCCCAACCACACACCUGGGGA

Get precursor sequence

Structure

        10          20        30        40        50        60
CCACCGCACACCAUGUU--|    UCU     UC  UG   C    UA        GGACA 
                   GCCAG   CUAGG  CC  AGA CCUU  ACCUGUGA     U
                   CGGUC   GGUCC  GG  UCU GGAG  UGGACACU     C
AGGGGUCCACACACCAACC^    UGC     GA  GU   U    --        GGGAC 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ar	Bl	Bo	Bo	Bo	Bo	Bo	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Br	Es	Ga	He	He	He	He	He	Ki	Li	Lu	Ly	Mu	Ne	Pa	Pl	Pl	Sk	Sp	Sp	St	Su	Te	Th	To	Tr	Ve

Mature sequence

Hsa-Mir-10-P3b_5p

mirBase accession

MIMAT0000443

Sequence

0- UCCCUGAGACCCUUUAACCUGUGA -24

Get sequence

Proposed targets

microrna.org: MIMAT0000443
TargetScanVert: hsa-miR-125a-5p
TargetMiner: hsa-miR-125a-5p
miRDB: MIMAT0000443

Star sequence

Hsa-Mir-10-P3b_3p*

mirBase accession

MIMAT0004602

Sequence

38- ACAGGUGAGGUUCUUGGGAGCC -60

Get sequence

Proposed targets

microrna.org: MIMAT0004602
TargetScanVert: hsa-miR-125a-3p
TargetMiner: hsa-miR-125a-3p
miRDB: MIMAT0004602