MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-10-P1b  Lch-Mir-10-P1c  Lch-Mir-10-P1d  Lch-Mir-10-P2b  Lch-Mir-10-P2c  Lch-Mir-10-P2d  Lch-Mir-10-P3c  Lch-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pbv-Mir-10-P3b  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(LatCha1_add)
JH126831.1: 1177148-1177205 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUUUCUUCAGGUCCUAGCAUGCUUCGCUGUCCCUGAGACCCUUAACCUGUGAGGACAUCAAGGUCACAGGUGAGGUUCUUGGGAACUGUGUGGCAUGCAGCUGCCCUGACCACUCCA
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Structure
        10          20        30        40        50         
GUUUUCUUCAGGUCCUA--|      U   U  C  UG   C     A       GGACA 
                   GCAUGCU CGC GU CC  AGA CCUUA CCUGUGA     \
                   CGUACGG GUG CA GG  UCU GGAGU GGACACU     U
ACCUCACCAGUCCCGUCGA^      U   U  A  GU   U     -       GGAAC 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Mature sequence

Lch-Mir-10-P3b_5p (predicted)

mirBase accessionNone
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
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Star sequence

Lch-Mir-10-P3b_3p* (predicted)

mirBase accessionNone
Sequence
36- ACAGGUGAGGUUCUUGGGAACU -58
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