Mir-10-P3b2

MirGeneDB ID

Gmo-Mir-10-P3b2

Family name

MIR-10 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-125a-1

Paralogues

Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1d1-v1 Gmo-Mir-10-P2c2 Gmo-Mir-10-P2d1 Gmo-Mir-10-P2d2 Gmo-Mir-10-P3b1 Gmo-Mir-10-P3c2 Gmo-Mir-10-P3d1 Gmo-Mir-10-P3d2

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3b Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3b Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3b Cfa-Mir-10-P3b Cin-Mir-10-P3 Cja-Mir-10-P3b Cpi-Mir-10-P3b Cpo-Mir-10-P3b Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dre-Mir-10-P3b2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3b Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3b Gja-Mir-10-P3b Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3b Isc-Mir-10-P3 Laf-Mir-10-P3b Lan-Mir-10-P3 Lch-Mir-10-P3b Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3b Mal-Mir-10-P3b2 Mgi-Mir-10-P3 Mml-Mir-10-P3b Mmr-Mir-10-P3b Mmu-Mir-10-P3b Mom-Mir-10-P3 Mun-Mir-10-P3b Nag-Mir-10-P3-v1 Nve-Mir-10 Oan-Mir-10-P3b Obi-Mir-10-P3 Ocu-Mir-10-P3b Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3b Pau-Mir-10-P3 Pbv-Mir-10-P3b Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3b Rph-Mir-10-P3 Sha-Mir-10-P3b Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3b Spu-Mir-10-P3 Sto-Mir-10-P3b Tca-Mir-10-P3 Tni-Mir-10-P3b2 War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3b Xtr-Mir-10-P3b

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_802: 167620-167677 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3b2)

Mir-10-P3b2 GeneScaffold_802: 167620-167677 [-] UCSC Ensembl
Let-7-P1b2 GeneScaffold_802: 171195-171264 [-] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

ACAUUCUGGAUCCGCCCGCGUGCAUCAUUGUCCCUGAGACCCUUAACCUGUGAUGAUGUAAAGGUCACAGGUGAGGUCCUUGGGAACAAGGCUGCGUGUGAAACCCGUCUGAAAGCAG

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Structure

        10          20        30        40        50         
ACAUUCUGGAUCCGCCC--|      UCA    C  UG  AC     A       UGAUG 
                   GCGUGCA   UUGU CC  AG  CCUUA CCUGUGA     \
                   UGUGCGU   AACA GG  UC  GGAGU GGACACU     U
GACGAAAGUCUGCCCAAAG^      CGG    A  GU  CU     -       GGAAA 
      110       100        90        80         70        60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-10-P3b2_5p

mirBase accession

MIMAT0044194

Sequence

0- UCCCUGAGACCCUUAACCUGUGA -23

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Star sequence

Gmo-Mir-10-P3b2_3p*

mirBase accession

MIMAT0044314

Sequence

36- ACAGGUGAGGUCCUUGGGAACA -58

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