MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-10-P3b

Family name MIR-10 (all species)
Seed CCCUGAG
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-125a
Paralogues Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1c-v2  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pbv-Mir-10-P2b  Pbv-Mir-10-P2c  Pbv-Mir-10-P2d  Pbv-Mir-10-P3c  Pbv-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3b  Ami-Mir-10-P3b  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3b  Cfa-Mir-10-P3b  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cpi-Mir-10-P3b  Cpo-Mir-10-P3b  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3b  Gja-Mir-10-P3b  Gmo-Mir-10-P3b1  Gmo-Mir-10-P3b2  Hsa-Mir-10-P3b  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3b  Lgi-Mir-10-P3  Loc-Mir-10-P3b  Mal-Mir-10-P3b1  Mal-Mir-10-P3b2  Mml-Mir-10-P3b  Mmu-Mir-10-P3b  Mun-Mir-10-P3b  Nve-Mir-10  Oan-Mir-10-P3b  Obi-Mir-10-P3  Ocu-Mir-10-P3b  Ovu-Mir-10-P3  Pmi-Mir-10-P3  Rno-Mir-10-P3b  Sha-Mir-10-P3b  Sko-Mir-10-P3  Spt-Mir-10-P3b  Spu-Mir-10-P3  Sto-Mir-10-P3b  Tca-Mir-10-P3  Tni-Mir-10-P3b2  Xbo-Mir-10-P3  Xla-Mir-10-P3b  Xtr-Mir-10-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE959282.1: 18903-18962 [-]
Clustered miRNAs
(< 50kb from Mir-10-P3b)
Mir-10-P3b KE959282.1: 18903-18962 [-]
Let-7-P1b KE959282.1: 26491-26558 [-]
Mir-10-P2b KE959282.1: 28275-28334 [-]
Precursor
(pre-Mir +30nt flank)
CUUUCUCCUUCCUUCCUGGCAUCUUCUCUGUCCCUGAGACCCUUAACCUGUGAGGAAGCCCAGAGGUCACAGGUGAGGGCCUUGGGAACUGAGUGGGUUGCCUCCUGCCAACAAAAUGAU
Get precursor sequence
Structure
        10         20         30        40        50          
CUUUCUCCUUCCUUCCU-   -|   U   U  C  UG  A      A       GGAAGC 
                  GGC AUCU CUC GU CC  AG CCCUUA CCUGUGA      \
                  CCG UGGG GAG CA GG  UC GGGAGU GGACACU      C
UAGUAAAACAACCGUCCU   U^   U   U  A  GU  C      -       GGAGAC 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-10-P3b_5p

mirBase accessionMIMAT0038915
Sequence
0- UCCCUGAGACCCUUAACCUGUGA -23
Get sequence
Star sequence

Pbv-Mir-10-P3b_3p* (predicted)

mirBase accessionNone
Sequence
38- ACAGGUGAGGGCCUUGGGAACU -60
Get sequence