MirGeneDB 3.0
MirGeneDB ID

Pbv-Mir-10-P1d

Family name MIR-10 (all species)
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-10b-2
Paralogues Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P2b  Pbv-Mir-10-P2c  Pbv-Mir-10-P2d  Pbv-Mir-10-P3b  Pbv-Mir-10-P3c  Pbv-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1d-v1  Mal-Mir-10-P1d1-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Mun-Mir-10-P1d-v1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1d1-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)		 KE953310.1: 36709-36768 [+]
Clustered miRNAs
(< 50kb from Mir-10-P1d-v1)		 Mir-10-P1d-v1 KE953310.1: 36709-36768 [+]
Mir-10-P1d-v2 KE953310.1: 36710-36767 [+]
Variant

Pbv-Mir-10-P1d-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
UAAAGGCCAAAUUCAUCCAUCGUUUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAGCACCUCUAUUGCAAAUUCGUCUCUAGGGGGAUAUGUGGAUGAUGCAAAAGGCUUGCUAAUGUU
Get precursor sequence
Structure
        10          20        30        40        50          
UAAAGGCCAAAUUCAUC--|             A    G    AC          UGAGCA 
                   CAUCGUUUAUAUAU CCCU UAGA  CGAAUUUGUG      \
                   GUAGUAGGUGUAUA GGGG AUCU  GCUUAAACGU      C
UUGUAAUCGUUCGGAAAAC^             -    G    CU          UAUCUC 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Pbv-Mir-10-P1d-v1_5p
mirBase accessionMIMAT0038826
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
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Star sequence

Pbv-Mir-10-P1d-v1_3p*
mirBase accessionMIMAT0038828
Sequence 
38- CAAAUUCGUCUCUAGGGGGAUA -60
Get sequence
Variant

Pbv-Mir-10-P1d-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
AAAGGCCAAAUUCAUCCAUCGUUUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAGCACCUCUAUUGCAAAUUCGUCUCUAGGGGGAUAUGUGGAUGAUGCAAAAGGCUUGCUAAUGU
Get precursor sequence
Structure
        10          20        30        40        50         
AAAGGCCAAAUUCAUCC--|            A    G    AC          UGAGCA 
                   AUCGUUUAUAUAU CCCU UAGA  CGAAUUUGUG      \
                   UAGUAGGUGUAUA GGGG AUCU  GCUUAAACGU      C
UGUAAUCGUUCGGAAAACG^            -    G    CU          UAUCUC 
      110       100        90         80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Pbv-Mir-10-P1d-v2_5p
mirBase accessionMIMAT0038826
Sequence 
0- ACCCUGUAGAACCGAAUUUGUGU -23
Get sequence
Star sequence

Pbv-Mir-10-P1d-v2_3p*
mirBase accessionMIMAT0038828
Sequence 
36- GCAAAUUCGUCUCUAGGGGGAU -58
Get sequence