MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-10-P1

Family name MIR-10 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-10
Paralogues Dpu-Mir-10-P2  Dpu-Mir-10-P3  Dpu-Mir-10-P4 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1c-v1  Aca-Mir-10-P1d-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1d-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1b-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1c-v1  Cli-Mir-10-P1d-v1  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1c-v1  Cmi-Mir-10-P1d-v1  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1c-v1  Cpi-Mir-10-P1d-v1  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1c-v1  Csc-Mir-10-P1q1-v1  Csc-Mir-10-P1q2-v1  Csc-Mir-10-P1q3-v1  Csc-Mir-10-P1r  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1c-v1  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1d1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Ebu-Mir-10-P1e  Ebu-Mir-10-P1f  Eca-Mir-10-P1b-v1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1c-v1  Gga-Mir-10-P1d-v1  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1c-v1  Gja-Mir-10-P1d-v1  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gmo-Mir-10-P1d1-v1  Gpa-Mir-10-P1  Gsa-Mir-10-P1o6  Gsa-Mir-10-P1o7  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hmi-Mir-10-P1a  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1b  Laf-Mir-10-P1c-v1  Lan-Mir-10-P1u  Lan-Mir-10-P1v  Lch-Mir-10-P1b  Lch-Mir-10-P1c  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1d-v1  Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1p-v1  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b2  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mal-Mir-10-P1d1-v1  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1b-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1c-v1  Mun-Mir-10-P1d-v1  Neu-Mir-10-P1b-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1c-v1  Pbv-Mir-10-P1d-v1  Pca-Mir-10-P1  Pcr-Mir-10-P1o4-v1  Pcr-Mir-10-P1o5  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Sme-Mir-10-P1s  Sme-Mir-10-P1t  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sro-Mir-10-P1w  Sro-Mir-10-P1x  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1c-v1  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b2  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  Tni-Mir-10-P1d1-v1  Tur-Mir-10-P1y  Tur-Mir-10-P1z-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d4-v1  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1c-v1  Xtr-Mir-10-P1d-v1 
Node of Origin (locus) Bilateria
Node of Origin (family) Eumetazoa
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_7: 304826-304884 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1-v1)		 Mir-10-P4 DAPPUscaffold_7: 282318-282382 [+] Ensembl
Mir-10-P1-v2 DAPPUscaffold_7: 304825-304885 [-] Ensembl
Mir-10-P1-v1 DAPPUscaffold_7: 304826-304884 [-] Ensembl
Variant

Dpu-Mir-10-P1-v1
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CAGCGUGACAGUUCAUCAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUAGUUGCAUCACAAGACAAAUUCGGUUCUAGAGAGGUUCGUGUGGGGCAUAAACAGCUACAUGCUAAAA
Get precursor sequence
Structure
        10          20        30         40        50        
CAGCGUGACAGUUCAUC--           CU   -| G    U          AGUUGC 
                   AUGCUCUACAU  ACC CU UAGA CCGAAUUUGU      A
                   UACGGGGUGUG  UGG GA AUCU GGCUUAAACA      U
AAAAUCGUACAUCGACAAA           CU   A^ G    U          GAACAC 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second minor Drosha cut +1.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Dpu-Mir-10-P1-v1_5p
mirBase accessionMIMAT0012636
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUA -22
Get sequence
Star sequence

Dpu-Mir-10-P1-v1_3p*
mirBase accessionNone
Sequence 
36- CAAAUUCGGUUCUAGAGAGGUUC -59
Get sequence
Variant

Dpu-Mir-10-P1-v2
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
ACAGCGUGACAGUUCAUCAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUAGUUGCAUCACAAGACAAAUUCGGUUCUAGAGAGGUUCGUGUGGGGCAUAAACAGCUACAUGCUAAAAC
Get precursor sequence
Structure
        10          20        30         40        50         
ACAGCGUGACAGUUCAUC--           CU   -| G    U          AGUUGC 
                    AUGCUCUACAU  ACC CU UAGA CCGAAUUUGU      A
                    UACGGGGUGUG  UGG GA AUCU GGCUUAAACA      U
CAAAAUCGUACAUCGACAAA           CU   A^ G    U          GAACAC 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second minor Drosha cut +1.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Dpu-Mir-10-P1-v2_5p
mirBase accessionMIMAT0012636
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Star sequence

Dpu-Mir-10-P1-v2_3p*
mirBase accessionNone
Sequence 
38- AAAUUCGGUUCUAGAGAGGUUCG -61
Get sequence