MirGeneDB 3.0
MirGeneDB ID

Tgu-Mir-10-P1c

Family name MIR-10 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-10a
Paralogues Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P2c  Tgu-Mir-10-P2d  Tgu-Mir-10-P3c  Tgu-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aca-Mir-10-P1c-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Ami-Mir-10-P1c-v1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Bta-Mir-10-P1c-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cfa-Mir-10-P1c-v1  Cja-Mir-10-P1c-v1  Cli-Mir-10-P1c-v1  Cmi-Mir-10-P1c-v1  Cpi-Mir-10-P1c-v1  Cpo-Mir-10-P1c-v1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1c-v1  Dpu-Mir-10-P1-v1  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c2-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1c-v1  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1c-v1  Gga-Mir-10-P1c-v1  Gja-Mir-10-P1c-v1  Gmo-Mir-10-P1c1-v1  Gmo-Mir-10-P1c2-v1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Hsa-Mir-10-P1c-v1  Isc-Mir-10-P1-v1  Laf-Mir-10-P1c-v1  Lch-Mir-10-P1c  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1c-v1  Mal-Mir-10-P1c1-v1  Mal-Mir-10-P1c2a-v1  Mal-Mir-10-P1c2b-v1  Mdo-Mir-10-P1c-v1  Mgi-Mir-10-P1  Mml-Mir-10-P1c-v1  Mmr-Mir-10-P1c-v1  Mmu-Mir-10-P1c-v1  Mom-Mir-10-P1  Mun-Mir-10-P1c-v1  Neu-Mir-10-P1c-v1  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1c-v1  Ocu-Mir-10-P1c-v1  Ofu-Mir-10-P1  Pab-Mir-10-P1c-v1  Pau-Mir-10-P1  Pbv-Mir-10-P1c-v1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1c-v1  Rph-Mir-10-P1  Sha-Mir-10-P1c-v1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1c  Spu-Mir-10-P1  Sto-Mir-10-P1c-v1  Tca-Mir-10-P1-v1  Tni-Mir-10-P1c1-v1  Tni-Mir-10-P1c2-v1  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1c3-v1  Xla-Mir-10-P1c4-v1  Xtr-Mir-10-P1c-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(TaeGut1_add)		 gnl|ti|1257183866: 637-699 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1c-v1)		 Mir-10-P1c-v1 gnl|ti|1257183866: 637-699 [+] UCSC Ensembl
Mir-10-P1c-v2 gnl|ti|1257183866: 638-698 [+] UCSC Ensembl
Variant

Tgu-Mir-10-P1c-v1
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
CCGAGGAGGACGCAACUGUCUUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUAAAAGGAAGUUGGGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACACAAACACUACAAACUCAGG
Get precursor sequence
Structure
        10           20        30        40        50        60 
CCGAGGAGGACGCAACU---|  UUU        A    G     C         GUAAAAGG 
                    GUC   CUAUAUGU CCCU UAGAU CGAAUUUGU        A
                    CAG   GAUGUAUA GGGG AUCUA GCUUAAACA        A
GGACUCAAACAUCACAAACA^  UU-        A    -     U         CUGGGUUG 
 120       110       100         90         80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-10-P1c-v1_5p
mirBase accessionMIMAT0018618
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
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Star sequence

Tgu-Mir-10-P1c-v1_3p*
mirBase accessionMIMAT0027035
Sequence 
42- AAAUUCGUAUCUAGGGGAAUA -63
Get sequence
Variant

Tgu-Mir-10-P1c-v2
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CGAGGAGGACGCAACUGUCUUUCUAUAUGUACCCUGUAGAUCCGAAUUUGUGUAAAAGGAAGUUGGGUCACAAAUUCGUAUCUAGGGGAAUAUGUAGUUGACACAAACACUACAAACUCAG
Get precursor sequence
Structure
        10           20        30        40        50        60
CGAGGAGGACGCAACUG---| UUU        A    G     C          UAAAAGG 
                    UC   CUAUAUGU CCCU UAGAU CGAAUUUGUG       A
                    AG   GAUGUAUA GGGG AUCUA GCUUAAACAC       A
GACUCAAACAUCACAAACAC^ UU-        A    -     U          UGGGUUG 
 .       110       100         90         80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-10-P1c-v2_5p
mirBase accessionMIMAT0018618
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUG -22
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Star sequence

Tgu-Mir-10-P1c-v2_3p*
mirBase accessionMIMAT0027035
Sequence 
40- CAAAUUCGUAUCUAGGGGAAU -61
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