Mir-10-P1-v1

MirGeneDB ID

Tca-Mir-10-P1

Family name

MIR-10 (all species)

Species

Red flour beetle (Tribolium castaneum)

MiRBase ID

tca-mir-10

Paralogues

Tca-Mir-10-P2 Tca-Mir-10-P3 Tca-Mir-10-P4

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1d-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1d-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1d-v1 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1d-v1 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1d-v1 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1c-v1 Csc-Mir-10-P1q1-v1 Csc-Mir-10-P1q2-v1 Csc-Mir-10-P1q3-v1 Csc-Mir-10-P1r Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1d1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Ebu-Mir-10-P1e Ebu-Mir-10-P1f Eca-Mir-10-P1b-v1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1d-v1 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1c-v1 Gja-Mir-10-P1d-v1 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1d1-v1 Gpa-Mir-10-P1 Gsa-Mir-10-P1o6 Gsa-Mir-10-P1o7 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hmi-Mir-10-P1a Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1b Laf-Mir-10-P1c-v1 Lan-Mir-10-P1u Lan-Mir-10-P1v Lch-Mir-10-P1b Lch-Mir-10-P1c Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1d-v1 Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1p-v1 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1d1-v1 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1c-v1 Mun-Mir-10-P1d-v1 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1c-v1 Pbv-Mir-10-P1d-v1 Pca-Mir-10-P1 Pcr-Mir-10-P1o4-v1 Pcr-Mir-10-P1o5 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pma-Mir-10-P1o1 Pma-Mir-10-P1o2 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Sme-Mir-10-P1s Sme-Mir-10-P1t Snu-Mir-10-P1 Spt-Mir-10-P1b Spt-Mir-10-P1c Spu-Mir-10-P1 Sro-Mir-10-P1w Sro-Mir-10-P1x Sto-Mir-10-P1b-v1 Sto-Mir-10-P1c-v1 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1d1-v1 Tur-Mir-10-P1y Tur-Mir-10-P1z-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1d-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Tcas5.2)

LG2: 8460384-8460441 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1-v1)

Mir-10-P1-v2 LG2: 8460383-8460442 [+] Ensembl
Mir-10-P1-v1 LG2: 8460384-8460441 [+] Ensembl
Mir-10-P4 LG2: 8499393-8499454 [-] Ensembl

Variant

Tca-Mir-10-P1-v1

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

AACGUCGCUUCACGUUAAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUUUGAAAUCAGGCGACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACAUUGCAACGUGACUAAA

Get precursor sequence

Structure

        10          20        30         40        50        
AACGUCGCUUCACGUUA--    U      CU   -| G    U           UGAAA 
                   AUGC CUACAU  ACC CU UAGA CCGAAUUUGUU     \
                   UACG GGUGUG  UGG GA AUCU GGCUUAAACAG     U
AAAUCAGUGCAACGUUACA    U      UU   A^ G    U           CGGAC 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-10-P1-v1_5p

mirBase accession

MIMAT0008357

Sequence

0- ACCCUGUAGAUCCGAAUUUGUU -22

Get sequence

Star sequence

Tca-Mir-10-P1-v1_3p*

mirBase accession

MIMAT0019101

Sequence

35- CAAAUUCGGUUCUAGAGAGGUUU -58

Get sequence

Variant

Tca-Mir-10-P1-v2

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

UAACGUCGCUUCACGUUAAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUUUGAAAUCAGGCGACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACAUUGCAACGUGACUAAAA

Get precursor sequence

Structure

        10          20        30         40        50         
UAACGUCGCUUCACGUUA--    U      CU   -| G    U          UUGAAA 
                    AUGC CUACAU  ACC CU UAGA CCGAAUUUGU      \
                    UACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
AAAAUCAGUGCAACGUUACA    U      UU   A^ G    U          GCGGAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ea	Em	Em	Em	Em	Em	Fe	Fe	Fe	Fe	Oo

Mature sequence

Tca-Mir-10-P1-v2_5p

mirBase accession

MIMAT0008357

Sequence

0- UACCCUGUAGAUCCGAAUUUGU -22

Get sequence

Star sequence

Tca-Mir-10-P1-v2_3p*

mirBase accession

MIMAT0019101

Sequence

37- AAAUUCGGUUCUAGAGAGGUUUG -60

Get sequence