Mir-10-P1o2

MirGeneDB ID

Pma-Mir-10-P1o2

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-10b

Paralogues

Pma-Mir-10-P1o1 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pma-Mir-10-P3o1 Pma-Mir-10-P3o2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cgi-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Npo-Mir-10-P1 Nve-Mir-10 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Sko-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046070.1: 1266553-1266615 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

ACGUCGCCAUGCAAUCGGCCCGGGUCCGCUUACCCUGUAGGUACGACCUUGCGUGUCCACAAAAAGGUUGCAAGGUUGUGACUACAGCGUACGCGGCCCCGGGAACAUACCUGUAGCAUCGGC

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Structure

        10          20        30        40        50        60 
ACGUCGCCAUGCAAUCGG--|     U    U   C      G           GUGUCCAC 
                    CCCGGG CCGC UAC CUGUAG UACGACCUUGC        \
                    GGGCCC GGCG AUG GACAUC GUGUUGGAACG        A
CGGCUACGAUGUCCAUACAA^     C    C   C      A           UUGGAAAA 
 120       110       100        90        80        70

Deep sequencing

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Comment

Not in assembly but in trace archives.

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-10-P1o2_5p

mirBase accession

MIMAT0019376

Sequence

0- UACCCUGUAGGUACGACCUUGC -22

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Star sequence

Pma-Mir-10-P1o2_3p*

mirBase accession

MIMAT0019377

Sequence

41- AAGGUUGUGACUACAGCGUACG -63

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