MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-10-P1o2

Family name MIR-10 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-10b
Paralogues Pma-Mir-10-P1o1  Pma-Mir-10-P2o1  Pma-Mir-10-P2o2  Pma-Mir-10-P3o1  Pma-Mir-10-P3o2 
Orthologues Aae-Mir-10-P1-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Lpo-Mir-10-P1o-v1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Eumetazoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046070.1: 1266553-1266615 [+] UCSC Ensembl
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
ACGUCGCCAUGCAAUCGGCCCGGGUCCGCUUACCCUGUAGGUACGACCUUGCGUGUCCACAAAAAGGUUGCAAGGUUGUGACUACAGCGUACGCGGCCCCGGGAACAUACCUGUAGCAUCGGC
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Structure
        10          20        30        40        50        60 
ACGUCGCCAUGCAAUCGG--|     U    U   C      G           GUGUCCAC 
                    CCCGGG CCGC UAC CUGUAG UACGACCUUGC        \
                    GGGCCC GGCG AUG GACAUC GUGUUGGAACG        A
CGGCUACGAUGUCCAUACAA^     C    C   C      A           UUGGAAAA 
 120       110       100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archives.
3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-10-P1o2_5p
mirBase accessionMIMAT0019376
Sequence 
0- UACCCUGUAGGUACGACCUUGC -22
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Star sequence

Pma-Mir-10-P1o2_3p*
mirBase accessionMIMAT0019377
Sequence 
41- AAGGUUGUGACUACAGCGUACG -63
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