MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-10-P1o

Family name MIR-10 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n 
Orthologues Aae-Mir-10-P1-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsa-Mir-10-P1o6  Gsa-Mir-10-P1o7  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pcr-Mir-10-P1o4-v1  Pcr-Mir-10-P1o5  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013678333.1: 8113-8170 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1o-v1)		 Mir-10-P1o-v2 NW_013678333.1: 8112-8171 [+] Ensembl
Mir-10-P1o-v1 NW_013678333.1: 8113-8170 [+] Ensembl
Variant

Lpo-Mir-10-P1o-v1
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
CAUGUAAUAUUUUCCUGUUGUUCUACAUCUACCCUGUAGAUCCGAAUUUGUCAGGGUUAGAACCACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACGAAACAUCACACAUCAU
Get precursor sequence
Structure
        10          20        30         40        50        
CAUGUAAUAUUUUCCUGU--   U      CU   -| G    U          CAGGGU 
                    UGU CUACAU  ACC CU UAGA CCGAAUUUGU      \
                    ACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
UACUACACACUACAAAGCAU   U      UU   A^ G    U          CCAAGA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-10-P1o-v1_5p
mirBase accessionNone
Sequence 
0- ACCCUGUAGAUCCGAAUUUGUC -22
Get sequence
Star sequence

Lpo-Mir-10-P1o-v1_3p*
mirBase accessionNone
Sequence 
35- CAAAUUCGGUUCUAGAGAGGUUU -58
Get sequence
Variant

Lpo-Mir-10-P1o-v2
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
GCAUGUAAUAUUUUCCUGUUGUUCUACAUCUACCCUGUAGAUCCGAAUUUGUCAGGGUUAGAACCACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACGAAACAUCACACAUCAUU
Get precursor sequence
Structure
        10          20        30         40        50         
GCAUGUAAUAUUUUCCU-  -   U      CU   -| G    U          CAGGGU 
                  GU UGU CUACAU  ACC CU UAGA CCGAAUUUGU      \
                  CA ACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
UUACUACACACUACAAAG  U   U      UU   A^ G    U          CCAAGA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Mature sequence

Lpo-Mir-10-P1o-v2_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGAAUUUGU -22
Get sequence
Star sequence

Lpo-Mir-10-P1o-v2_3p*
mirBase accessionNone
Sequence 
37- AAAUUCGGUUCUAGAGAGGUUUG -60
Get sequence