MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-10-P1o-v1

Family name MIR-10 (all species)
Seed CCCUGUA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-10-P1k-v1  Lpo-Mir-10-P1k-v2  Lpo-Mir-10-P1l-v1  Lpo-Mir-10-P1l-v2  Lpo-Mir-10-P1m-v1  Lpo-Mir-10-P1m-v2  Lpo-Mir-10-P1n-v1  Lpo-Mir-10-P1n-v2  Lpo-Mir-10-P1o-v2  Lpo-Mir-10-P1p-v1  Lpo-Mir-10-P1p-v2  Lpo-Mir-10-P2o  Lpo-Mir-10-P2p  Lpo-Mir-10-P2q  Lpo-Mir-10-P3o  Lpo-Mir-10-P3p  Lpo-Mir-10-P3q  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Pfl-Mir-10-P1  Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Eumetazoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013678333.1: 8113-8170 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGUAAUAUUUUCCUGUUGUUCUACAUCUACCCUGUAGAUCCGAAUUUGUCAGGGUUAGAACCACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACGAAACAUCACACAUCAU
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Structure
        10          20        30         40        50        
CAUGUAAUAUUUUCCUGU--   U      CU   -| G    U          CAGGGU 
                    UGU CUACAU  ACC CU UAGA CCGAAUUUGU      \
                    ACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
UACUACACACUACAAAGCAU   U      UU   A^ G    U          CCAAGA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Mature sequence

Lpo-Mir-10-P1o-v1_5p

mirBase accessionNone
Sequence
0- ACCCUGUAGAUCCGAAUUUGUC -22
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Star sequence

Lpo-Mir-10-P1o-v1_3p*

mirBase accessionNone
Sequence
35- CAAAUUCGGUUCUAGAGAGGUUU -58
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