Mir-10-P2p

MirGeneDB ID

Lpo-Mir-10-P2p

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P2o Lpo-Mir-10-P2q Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Mgi-Mir-10-P2 Mom-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pau-Mir-10-P2 Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rph-Mir-10-P2 Sko-Mir-10-P2 Snu-Mir-10-P2 Tca-Mir-10-P2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013665688.1: 595479-595542 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2p)

Mir-10-P3p NW_013665688.1: 584358-584414 [-] Ensembl
Let-7-P16 NW_013665688.1: 593421-593488 [-] Ensembl
Novel-1 NW_013665688.1: 595096-595157 [-] Ensembl
Mir-10-P2p NW_013665688.1: 595479-595542 [-] Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

GCCUGAGGGCGAAGUUCACCCUGCCGCCUGAACCCGUAGAAUCGAACUUGUGUUCUACUACUAUUGCAGCCACAAGCUCGUUUCUAUGGGUCUAGGCUGUGAUGGAGGUUUGUCAACGUCAUUA

Get precursor sequence

Structure

        10         20         30        40        50        60 
GCCUGAGGGCGAAGUUCA-  CU-| C     A          U   A      UUCUACUA 
                   CC   GC GCCUG ACCCGUAGAA CGA CUUGUG        C
                   GG   UG CGGAU UGGGUAUCUU GCU GAACAC        U
AUUACUGCAACUGUUUGGA  UAG^ U     C          U   C      CGACGUUA 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-10-P2p_5p

mirBase accession

None

Sequence

0- AACCCGUAGAAUCGAACUUGUG -22

Get sequence

Star sequence

Lpo-Mir-10-P2p_3p*

mirBase accession

None

Sequence

40- CACAAGCUCGUUUCUAUGGGUCUA -64

Get sequence