Mir-10-P3o

MirGeneDB ID

Lpo-Mir-10-P3o

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1k-v2 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1l-v2 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1m-v2 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1n-v2 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1o-v2 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P1p-v2 Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P3 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cgi-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Esc-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Nve-Mir-10 Obi-Mir-10-P3 Ovu-Mir-10-P3 Pma-Mir-10-P3o1 Pma-Mir-10-P3o2 Pmi-Mir-10-P3 Sko-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668056.1: 175514-175570 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUUUUUAGGAAAUAUGACCCUCUUCCCCACUCCCUGAGACCCUAGCUUGUGAUAGUGUAAAGAUCACAUGCUAGACUCUCAGGCCUUGGGUGACUGGUAUGAAAUACUGCAAAAUGA

Get precursor sequence

Structure

        10          20        30        40        50        
GUUUUUAGGAAAUAUGAC--| UC UC    CUC       CC     U     UAGUG 
                    CC  U  CCCA   CCUGAGA  CUAGC UGUGA     \
                    GG  A  GGGU   GGACUCU  GAUCG ACACU     U
AGUAAAACGUCAUAAAGUAU^ UC GU    UCC       CA     U     AGAAA 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Fe	Fe	Fe	Ma	Ma	To

Mature sequence

Lpo-Mir-10-P3o_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAGCUUGUGA -22

Get sequence

Star sequence

Lpo-Mir-10-P3o_3p*

mirBase accession

None

Sequence

35- ACAUGCUAGACUCUCAGGCCUU -57

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