Mir-10-P3o

MirGeneDB ID

Lpo-Mir-10-P3o

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P2o Lpo-Mir-10-P2p Lpo-Mir-10-P2q Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P3 Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Mgi-Mir-10-P3 Mom-Mir-10-P3 Nag-Mir-10-P3-v1 Nve-Mir-10 Obi-Mir-10-P3 Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pau-Mir-10-P3 Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pma-Mir-10-P3o1 Pma-Mir-10-P3o2 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sko-Mir-10-P3 Sma-Mir-10-P3o3 Sma-Mir-10-P3o4 Sma-Mir-10-P3o5 Snu-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 War-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668056.1: 175514-175570 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3o)

Mir-10-P2o NW_013668056.1: 167700-167760 [+] Ensembl
Let-7-P15 NW_013668056.1: 170127-170193 [+] Ensembl
Mir-10-P3o NW_013668056.1: 175514-175570 [+] Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

GUUUUUAGGAAAUAUGACCCUCUUCCCCACUCCCUGAGACCCUAGCUUGUGAUAGUGUAAAGAUCACAUGCUAGACUCUCAGGCCUUGGGUGACUGGUAUGAAAUACUGCAAAAUGA

Get precursor sequence

Structure

        10          20        30        40        50        
GUUUUUAGGAAAUAUGAC--| UC UC    CUC       CC     U     UAGUG 
                    CC  U  CCCA   CCUGAGA  CUAGC UGUGA     \
                    GG  A  GGGU   GGACUCU  GAUCG ACACU     U
AGUAAAACGUCAUAAAGUAU^ UC GU    UCC       CA     U     AGAAA 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-10-P3o_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAGCUUGUGA -22

Get sequence

Star sequence

Lpo-Mir-10-P3o_3p*

mirBase accession

None

Sequence

35- ACAUGCUAGACUCUCAGGCCUU -57

Get sequence