Mir-10-P2o

MirGeneDB ID

Lpo-Mir-10-P2o

Family name

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1p-v1 Lpo-Mir-10-P2p Lpo-Mir-10-P2q Lpo-Mir-10-P3o Lpo-Mir-10-P3p Lpo-Mir-10-P3q Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n

Orthologues

Aae-Mir-10-P2 Adi-Mir-10 Aga-Mir-10-P2 Agr-Mir-10-P2 Asp-Mir-10 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Bfl-Mir-10-P2-v1 Bge-Mir-10-P2 Bko-Mir-10-P2 Bla-Mir-10-P2-v1 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dgr-Mir-10-P2 Dlo-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Eba-Mir-10-P2 Gpa-Mir-10-P2 Gsp-Mir-10-P2 Hru-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lhy-Mir-10-P2 Llo-Mir-10-P2 Mgi-Mir-10-P2 Mom-Mir-10-P2 Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ofu-Mir-10-P2 Ovu-Mir-10-P2 Pau-Mir-10-P2 Pca-Mir-10-P2 Pdu-Mir-10-P2 Pfl-Mir-10-P2 Ple-Mir-10-P2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pmi-Mir-10-P2 Pve-Mir-10-P2 Rph-Mir-10-P2 Sko-Mir-10-P2 Snu-Mir-10-P2 Tca-Mir-10-P2 Tur-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013668056.1: 167700-167760 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P2o)

Mir-10-P2o NW_013668056.1: 167700-167760 [+] Ensembl
Let-7-P15 NW_013668056.1: 170127-170193 [+] Ensembl
Mir-10-P3o NW_013668056.1: 175514-175570 [+] Ensembl

Seed

ACCCGUA

Precursor
(pre-Mir +30nt flank)

GCCCGACGACGAAGUUUACCUUGCCGCCUGAACCCGUAGAAUCGGAUUUGUGUUCUUUCUUCGCAACCACAAGCUCGUUUCUAAGGGUCUAGGCUGUGUGGGGGUCGGCACUGAAAGUAUU

Get precursor sequence

Structure

        10        20          30        40        50          
GCCCGACGACGAAGUUUA   UG - -|    A    G     U  GA      UUCUUUC 
                  CCU  C C GCCUG ACCC UAGAA CG  UUUGUG       \
                  GGG  G G CGGAU UGGG AUCUU GC  GAACAC       U
UUAUGAAAGUCACGGCUG   GU U U^    C    A     U  UC      CAACGCU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-10-P2o_5p

mirBase accession

None

Sequence

0- AACCCGUAGAAUCGGAUUUGUG -22

Get sequence

Star sequence

Lpo-Mir-10-P2o_3p*

mirBase accession

None

Sequence

39- CAAGCUCGUUUCUAAGGGUCUA -61

Get sequence