Mir-10-P2o8

MirGeneDB ID

Asu-Mir-10-P2o8

Family name

MIR-10 (all species)

Seed

ACCUGAG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-100e

Paralogues

Asu-Mir-10-P1 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P3 Asu-Mir-10-P4

Orthologues

Aae-Mir-10-P2 Bfl-Mir-10-P2-v1 Bfl-Mir-10-P2-v2 Bge-Mir-10-P2 Bla-Mir-10-P2-v1 Bla-Mir-10-P2-v2 Bpl-Mir-10-P2 Cbr-Mir-10-P2 Cel-Mir-10-P2 Cgi-Mir-10-P2 Cin-Mir-10-P2 Cte-Mir-10-P2 Dan-Mir-10-P2 Dma-Mir-10-P2 Dme-Mir-10-P2 Dmo-Mir-10-P2 Dpu-Mir-10-P2 Dsi-Mir-10-P2 Dya-Mir-10-P2 Isc-Mir-10-P2 Lan-Mir-10-P2 Lgi-Mir-10-P2 Lpo-Mir-10-P2o Npo-Mir-10-P2 Nve-Mir-10 Obi-Mir-10-P2 Ovu-Mir-10-P2 Pfl-Mir-10-P2 Pmi-Mir-10-P2 Sko-Mir-10-P2 Tca-Mir-10-P2 Xbo-Mir-10-P2 Xbo-Mir-10-P2-as

Node of Origin (locus)

A. suum

Node of Origin (family)

Eumetazoa

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold68: 233217-233273 [-]

Clustered miRNAs
(< 50kb from Mir-10-P2o8)

Mir-10-P2o8 Scaffold68: 233217-233273 [-]
Mir-5345 Scaffold68: 235543-235601 [+]

Precursor
(pre-Mir +30nt flank)

UUGUUUGUCUGGAUUGUGGUGUGUGCGGUGAACCUGAGGACCGUAUGCUGUGUUUGGAUAGGUAACACGCAACGGUGUUCGGGUCCACUAAAGCAUCCAAACUCAUCCUCGACCGUA

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Structure

        10          20         30        40        50         
UUGUUUGUCUGGAUUGU--| U    GC-    A       G     A   U     UGGA 
                   GG GUGU   GGUG ACCUGAG ACCGU UGC GUGUU    \
                   CC UACG   UCAC UGGGCUU UGGCA ACG CACAA    U
AUGCCAGCUCCUACUCAAA^ -    AAA    C       G     -   -     UGGA 
     110       100         90        80         70         60

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

0h	11	12	24	46	64	6d	7d	8d	96	Em	La	Ov	Se	Sp	Te	Zy

Mature sequence

Asu-Mir-10-P2o8_5p

mirBase accession

MIMAT0021542

Sequence

0- AACCUGAGGACCGUAUGCUGUGUU -24

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Star sequence

Asu-Mir-10-P2o8_3p* (predicted)

mirBase accession

MIMAT0021543

Sequence

35- CACGCAACGGUGUUCGGGUCCA -57

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