MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-5345

Family name MIR-5345 (all species)
Seed AGGCACU
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-5345a
Paralogues
Orthologues
Node of Origin (locus) A. suum
Node of Origin (family) A. suum
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold68: 235543-235601 [+]
Clustered miRNAs
(< 50kb from Mir-5345)
Mir-10-P2o8 Scaffold68: 233217-233273 [-]
Mir-5345 Scaffold68: 235543-235601 [+]
Precursor
(pre-Mir +30nt flank)
GCCAGUGAAGUGCUGCGAGGUGUGCUCAAUAAGGCACUGGAUUGGUCAGUUGAGUUUUCUUAGCGAAACUGGCCAUUCCAUUGUCUGGCCGAGCGGACCAAUGUUGUGCAGCUCAUGUA
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Structure
        10          20        30        40        50         
GCCAGUGAAGUGCUGCGA--|  G     AAUA     C    U         GAGUUUU 
                    GGU UGCUC    AGGCA UGGA UGGUCAGUU       \
                    CCA GCGAG    UCUGU ACCU ACCGGUCAA       C
AUGUACUCGACGUGUUGUAA^  G     CCGG     U    U         AGCGAUU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-5345_5p

mirBase accessionMIMAT0021537
Sequence
0- AAGGCACUGGAUUGGUCAGUU -21
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Star sequence

Asu-Mir-5345_3p*

mirBase accessionMIMAT0021538
Sequence
38- CUGGCCAUUCCAUUGUCUGGC -59
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