MirGeneDB ID | Asu-Mir-10-P2o6 |
Family name |
MIR-10 (all species) |
Seed |
ACCCGUA |
Species |
Large roundworm (Ascaris suum) |
MiRBase ID |
asu-mir-100b
|
Paralogues |
Asu-Mir-10-P1
Asu-Mir-10-P2o3
Asu-Mir-10-P2o4
Asu-Mir-10-P2o5
Asu-Mir-10-P2o7
Asu-Mir-10-P2o8
Asu-Mir-10-P3
Asu-Mir-10-P4
|
Orthologues |
Aae-Mir-10-P2
Bfl-Mir-10-P2-v1
Bfl-Mir-10-P2-v2
Bge-Mir-10-P2
Bla-Mir-10-P2-v1
Bla-Mir-10-P2-v2
Bpl-Mir-10-P2
Cbr-Mir-10-P2
Cel-Mir-10-P2
Cgi-Mir-10-P2
Cin-Mir-10-P2
Cte-Mir-10-P2
Dan-Mir-10-P2
Dma-Mir-10-P2
Dme-Mir-10-P2
Dmo-Mir-10-P2
Dpu-Mir-10-P2
Dsi-Mir-10-P2
Dya-Mir-10-P2
Isc-Mir-10-P2
Lan-Mir-10-P2
Lgi-Mir-10-P2
Lpo-Mir-10-P2o
Npo-Mir-10-P2
Nve-Mir-10
Obi-Mir-10-P2
Ovu-Mir-10-P2
Pfl-Mir-10-P2
Pmi-Mir-10-P2
Sko-Mir-10-P2
Tca-Mir-10-P2
Xbo-Mir-10-P2
Xbo-Mir-10-P2-as
|
Node of Origin (locus) |
A. suum
|
Node of Origin (family) |
Eumetazoa
|
Genome context (ASU_PRJNA80881_plustraces) |
Scaffold28: 351836-351896 [+]
|
Precursor (pre-Mir +30nt flank) |
GACUGCUUUGCUGGAGUGUCGCUCUCGGUCAACCCGUAGAUUCGAAUUUGUGUUUACAUAAUGGAAUAACACUGUUCGAUUCUCGGGUAGAUCGAAUGCUGCUCAUACCCAGCGUGUCCUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACUGCUUUGCUGGAGU--| C UC A U U UU UACAUA
GU GC UCGGUC ACCCG AGA UCGAAU GUGUU \
CG CG AGCUAG UGGGC UCU AGCUUG CACAA A
AUCCUGUGCGACCCAUACU^ U UA A - U U- UAAGGU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
0h |
11 |
12 |
24 |
46 |
64 |
6d |
7d |
8d |
96 |
Em |
La |
Ov |
Se |
Sp |
Te |
Zy |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Asu-Mir-10-P2o6_5p |
mirBase accession | MIMAT0021489 |
Sequence |
0- AACCCGUAGAUUCGAAUUUGUGUU -24
Get sequence
|
Star sequence |
Asu-Mir-10-P2o6_3p* |
mirBase accession | MIMAT0021490 |
Sequence |
39- CACUGUUCGAUUCUCGGGUAGA -61
Get sequence
|