Mir-10-P4

MirGeneDB ID

Asu-Mir-10-P4

Family name

MIR-10 (all species)

Seed

AAGCUCG

Species

Large roundworm (Ascaris suum)

MiRBase ID

asu-mir-993

Paralogues

Asu-Mir-10-P1 Asu-Mir-10-P2o3 Asu-Mir-10-P2o4 Asu-Mir-10-P2o5 Asu-Mir-10-P2o6 Asu-Mir-10-P2o7 Asu-Mir-10-P2o8 Asu-Mir-10-P3

Orthologues

Aae-Mir-10-P4 Bge-Mir-10-P4 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Tca-Mir-10-P4

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(ASU_PRJNA80881_plustraces)

Scaffold426: 156003-156060 [+]

Precursor
(pre-Mir +30nt flank)

CUAUGCACUAUUCAAUCGUCCGGAUGGUUUACCCUGUAGAAGCGUGUUUAUCUGCACAUUUCAAAAUAAGCUCGUCUCUACAGGCAGGACCUUCCAGGCUUCUAUGACCAAUCGGACA

Get precursor sequence

Structure

        10          20        30        40        50        
CUAUGCACUAUUCAAUC--|  C   U     AC        AG  U      CUGCAC 
                   GUC GGA GGUUU  CCUGUAGA  CG GUUUAU      A
                   CGG CCU CCAGG  GGACAUCU  GC CGAAUA      U
ACAGGCUAACCAGUAUCUU^  A   U     AC        CU  U      AAACUU 
      110       100        90        80        70        60