MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-10-P4

Family name MIR-10 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-10-P1  Pdu-Mir-10-P2  Pdu-Mir-10-P3  Pdu-Mir-10-P4-as  Pdu-Mir-10-P5  Pdu-Mir-10-P7  Pdu-Mir-10-P8 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4o1  Bko-Mir-10-P4o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000027.1: 3633349-3633410 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P4)		 Mir-10-P4 JAPTHN010000027.1: 3633349-3633410 [-] Ensembl
Mir-10-P4-as JAPTHN010000027.1: 3633350-3633412 [+] Ensembl
Seed GAAGCUC
Precursor
(pre-Mir +30nt flank)		 
UUUUUUUGUUGGCAUGCGCAUUCUGCAUAUACCCUGUAGACCCGGGUUUGUGUUGUUCAGAGCAAAUCACAGAAGCUCGGUUCUACAGGUAUAUUUUGAACGCGCUUUCUACGGUGAAUAUU
Get precursor sequence
Structure
        10          20        30        40        50        60 
UUUUUUUGUUGGCAUGC--| A   UGC       C      C        G   UGUUCAG 
                   GC UUC   AUAUACC UGUAGA CCGGGUUU UGU       \
                   CG AAG   UAUAUGG ACAUCU GGCUCGAA ACA       A
UUAUAAGUGGCAUCUUUCG^ C   UUU       -      U        G   CUAAACG 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Mir-10-P4_5p*
mirBase accessionNone
Sequence 
0- ACCCUGUAGACCCGGGUUUGUGU -23
Get sequence
Mature sequence

Pdu-Mir-10-P4_3p
mirBase accessionNone
Sequence 
40- AGAAGCUCGGUUCUACAGGUAU -62
Get sequence