MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-10-P5

Family name MIR-10 (all species)
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues Pdu-Mir-10-P1  Pdu-Mir-10-P2  Pdu-Mir-10-P3  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Pdu-Mir-10-P7  Pdu-Mir-10-P8 
Orthologues Adi-Mir-10  Agr-Mir-10-P5  Asp-Mir-10  Cte-Mir-10-P5  Eba-Mir-10-P5  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Hru-Mir-10-P5  Lgi-Mir-10-P5  Lhy-Mir-10-P5  Llo-Mir-10-P5a-v1  Llo-Mir-10-P5b-v1  Mgi-Mir-10-P5  Mom-Mir-10-P5  Nve-Mir-10  Ofu-Mir-10-P5  Pau-Mir-10-P5  Pve-Mir-10-P5  Rph-Mir-10-P5  Snu-Mir-10-P5  War-Mir-10-P5 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000027.1: 2892359-2892418 [+] Ensembl
Seed UACCCUG
Precursor
(pre-Mir +30nt flank)		 
AAAAUUUAUUUUUGAAUGUCUGAUAUACCCUUACCCUGUAGAACCGAGCGAGUAUGUAUUCAUUAGUACCACUCAGUUCACAGGGUCAUUGUAUGCCAUUCUAAUUGCUACUGACCACGU
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Structure
        10        20          30        40        50          
AAAAUUUAUUUUUGAAUGUC--| A     CCUU       A    C   CGAGUAUGUAU 
                      UG UAUAC    ACCCUGU GAAC GAG           \
                      AC GUAUG    UGGGACA CUUG CUC           U
UGCACCAGUCAUCGUUAAUCUU^ C     UUAC       -    A   ACCAUGAUUAC 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-10-P5_5p
mirBase accessionNone
Sequence 
0- UUACCCUGUAGAACCGAGCGAGU -23
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Star sequence

Pdu-Mir-10-P5_3p*
mirBase accessionNone
Sequence 
38- CCACUCAGUUCACAGGGUCAUU -60
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