Mir-10-P4-as

MirGeneDB ID

Pdu-Mir-10-P4-as

Family name

MIR-10 (all species)

Species

Dumerils clam worm (Platynereis dumerilii)

MiRBase ID

Paralogues

Pdu-Mir-10-P1 Pdu-Mir-10-P2 Pdu-Mir-10-P3 Pdu-Mir-10-P4 Pdu-Mir-10-P5 Pdu-Mir-10-P7 Pdu-Mir-10-P8

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

P. dumerilii

Node of Origin (family)

Eumetazoa

Genome context
(GCA_026936325.1_EMBL_pdum_1.0)

JAPTHN010000027.1: 3633350-3633412 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P4-as)

Mir-10-P4 JAPTHN010000027.1: 3633349-3633410 [-] Ensembl
Mir-10-P4-as JAPTHN010000027.1: 3633350-3633412 [+] Ensembl

Seed

ACCUGUA

Precursor
(pre-Mir +30nt flank)

AUAUUCACCGUAGAAAGCGCGUUCAAAAUAUACCUGUAGAACCGAGCUUCUGUGAUUUGCUCUGAACAACACAAACCCGGGUCUACAGGGUAUAUGCAGAAUGCGCAUGCCAACAAAAAAACA

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Structure

        10         20        30         40        50        60 
AUAUUCACCGUAGAAAG-       AAA     -|       A   AGCUUCUGUGAUUUGC 
                  CGCGUUC   AUAUA CCUGUAGA CCG                \
                  GCGUAAG   UAUAU GGACAUCU GGC                U
ACAAAAAAACAACCGUAC       ACG     G^       G   CCAAACACAACAAGUC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

24	24	24	24	24	36	36	36	36	36	48	48	48	48	48	6d	6d	6d	6d	72	72	72	72	72

Mature sequence

Pdu-Mir-10-P4-as_5p

mirBase accession

None

Sequence

0- UACCUGUAGAACCGAGCUUCUG -22

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Star sequence

Pdu-Mir-10-P4-as_3p*

mirBase accession

None

Sequence

41- CAAACCCGGGUCUACAGGGUAU -63

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