Mir-10-P4

MirGeneDB ID

Hme-Mir-10-P4

Family name

MIR-10 (all species)

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-993

Paralogues

Hme-Mir-10-P1-v1

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(Hmel_1)

HE667778: 86419-86482 [+] Ensembl

Seed

AAGCUCG

Precursor
(pre-Mir +30nt flank)

AGAAGAAACAUUUAUUGGCACAUUCGUGAUCUACCCUGUAGAUCCGGGCUUUUGUAGUUUAAUUUUCAUCAGAAGCUCGUCUCUACAGGUAUCUCACGGCUGGAAGACCUCGCUACUUUGUUAC

Get precursor sequence

Structure

        10        20          30        40        50        60  
AGAAGAAACAUUUAUUGGCA--| UU     UC    C      UC          UAGUUUA 
                      CA  CGUGA  UACC UGUAGA  CGGGCUUUUG       \
                      GU  GCACU  AUGG ACAUCU  GCUCGAAGAC       A
CAUUGUUUCAUCGCUCCAGAAG^ CG     CU    -      CU          UACUUUU 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

Comment

There are Drosha cuts +1 and +2 relative to what is annoated here.

3' NTU

Motifs

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Star sequence

Hme-Mir-10-P4_5p*

mirBase accession

None

Sequence

0- CUACCCUGUAGAUCCGGGCUUUUG -24

Get sequence

Mature sequence

Hme-Mir-10-P4_3p

mirBase accession

MIMAT0025000

Sequence

41- GAAGCUCGUCUCUACAGGUAUCU -64

Get sequence