MirGeneDB

122 Heliconius melpomene microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC Ad Ad Fe Fe Fe Fe Ma Ma
Hme-Bantam hme-bantam BANTAM GAGAUCA None MIMAT0024930 HE670669 51613 51673 + Protostomia Protostomia No
Hme-Iab-4 None IAB-4 CGUAUAC None None HE667775 54413 54472 - Arthropoda Arthropoda Unknown 1 1
Hme-Iab-4-as None IAB-4 UACGUAU None None HE667775 54413 54475 + Pancrustacea Arthropoda Unknown 1
Hme-Let-7 hme-let-7 LET-7 GAGGUAG MIMAT0024931 None HE670867 81559 81626 - Bilateria Bilateria No 1
Hme-Mir-1 hme-mir-1a MIR-1 GGAAUGU None MIMAT0024946 HE672073 1166274 1166332 - Bilateria Bilateria No
Hme-Mir-2-o63-v1 hme-mir-2a MIR-2 AUCACAG None MIMAT0024971 HE671256 344483 344538 + H. melpomene Protostomia No 1
Hme-Mir-2-o63-v2 hme-mir-2a MIR-2 CACAGCC None MIMAT0024971 HE671256 344481 344540 + H. melpomene Protostomia No 1 1
Hme-Mir-2-o64-v1 hme-mir-2b MIR-2 AUCACAG None MIMAT0024972 HE671256 344898 344954 + H. melpomene Protostomia No 1
Hme-Mir-2-o64-v2 hme-mir-2b MIR-2 CACAGCC None MIMAT0024972 HE671256 344897 344955 + H. melpomene Protostomia No 1 1
Hme-Mir-2-o65 hme-mir-2c MIR-2 AUCACAG None MIMAT0024973 HE671256 345032 345089 + H. melpomene Protostomia No 1
Hme-Mir-2-P4e hme-mir-13a MIR-2 AUCACAG None MIMAT0024940 HE671256 344637 344695 + Endopterygota Protostomia No
Hme-Mir-2-P4f hme-mir-13b MIR-2 AUCACAG None MIMAT0024941 HE671256 344775 344830 + Endopterygota Protostomia No
Hme-Mir-2-P7 hme-mir-11 MIR-2 AUCACAG None MIMAT0024934 HE672080 326757 326812 - Neoptera Protostomia No 1
Hme-Mir-2-P8 hme-mir-308 MIR-2 AUCACAG None MIMAT0024977 HE669504 9991 10044 + Endopterygota Protostomia No 1
Hme-Mir-3-o1 None MIR-3 CACUGGG None None HE671859 112283 112342 - H. melpomene Pancrustacea No
Hme-Mir-3-o2 None MIR-3 CACUGGG None None HE671859 110635 110693 - H. melpomene Pancrustacea No
Hme-Mir-3-o3 None MIR-3 CACUGGG None None HE671859 110937 110990 - H. melpomene Pancrustacea No 1
Hme-Mir-3-o4 None MIR-3 UAGUCAU None None HE671859 111487 111543 - H. melpomene Pancrustacea No 1
Hme-Mir-3-o5 None MIR-3 CACUGGG None None HE671859 113451 113508 - H. melpomene Pancrustacea No 1 1
Hme-Mir-3-o6 None MIR-3 CACUGGG None None HE671859 113699 113757 - H. melpomene Pancrustacea No 1
Hme-Mir-3-o7 hme-mir-2733 MIR-3 CACUGGG None MIMAT0024951 HE671859 110477 110535 - H. melpomene Pancrustacea Unknown
Hme-Mir-7 hme-mir-7 MIR-7 GGAAGAC MIMAT0024984 None HE670618 34409 34469 - Bilateria Bilateria No 1 1
Hme-Mir-8 hme-mir-8 MIR-8 AAUACUG None MIMAT0024988 HE670477 58600 58661 + Bilateria Bilateria No 1
Hme-Mir-9-o7 hme-mir-9a MIR-9 CUUUGGU None MIMAT0025003 HE669612 10319 10377 - H. melpomene Bilateria No 1
Hme-Mir-9-o8 hme-mir-9b MIR-9 CUUUGGU MIMAT0025002 None HE670875 766577 766635 + H. melpomene Bilateria No 1
Hme-Mir-9-o9 hme-mir-79 MIR-9 UAAAGCU None MIMAT0024987 HE669612 9693 9752 - H. melpomene Bilateria No
Hme-Mir-9-o10 None MIR-9 UAAAGCU None None HE671859 114241 114299 - H. melpomene Bilateria No 1
Hme-Mir-10-P1-v1 hme-mir-10 MIR-10 CCCUGUA MIMAT0024932 None HE667778 152725 152782 - Arthropoda Eumetazoa No 1
Hme-Mir-10-P1-v2 hme-mir-10 MIR-10 ACCCUGU MIMAT0024932 None HE667778 152724 152783 - Arthropoda Eumetazoa No 1
Hme-Mir-10-P4 hme-mir-993 MIR-10 AAGCUCG None MIMAT0025000 HE667778 86419 86482 + Protostomia Eumetazoa No
Hme-Mir-12 hme-mir-12 MIR-12 GAGUAUU None MIMAT0024936 HE669534 42572 42850 + Protostomia Protostomia No 1
Hme-Mir-14 hme-mir-14 MIR-14 CAGUCUU None MIMAT0024942 HE671256 64280 64336 + Pterygota Pterygota No
Hme-Mir-22-P2 hme-mir-745 MIR-22 AGCUGCC None MIMAT0024986 HE671337 442728 442786 - Bilateria Bilateria No 1
Hme-Mir-29-P1d hme-mir-998 MIR-29 AGCACCA None MIMAT0025001 HE672080 325259 325313 - Pancrustacea Bilateria No 1
Hme-Mir-29-P2 hme-mir-285 MIR-29 AGCACCA None MIMAT0024970 HE671036 44655 44713 - Bilateria Bilateria No 1 1
Hme-Mir-31 None MIR-31 GGCAAGA None None FASA01202097.1 1291 1349 + Bilateria Bilateria Unknown 1
Hme-Mir-33-P5 hme-mir-33-1 MIR-33 UGCAUUG MIMAT0024980 None HE670818 67948 68008 + H. melpomene Bilateria No 1
Hme-Mir-33-P6 hme-mir-33-2 MIR-33 UGCAUUG MIMAT0024980 None HE671035 83696 83756 - H. melpomene Bilateria No 1
Hme-Mir-34-P8a hme-mir-34-1 MIR-34 GGCAGUG MIMAT0024983 None HE669997 8038 8096 + H. melpomene Bilateria No 1 1
Hme-Mir-34-P8b hme-mir-34-2 MIR-34 GGCAGUG MIMAT0024983 None HE667979 380 438 - H. melpomene Bilateria No 1
Hme-Mir-67 hme-mir-307 MIR-67 CACAACC None MIMAT0024976 HE671244 79056 79123 - Protostomia Protostomia No 1 1
Hme-Mir-71 hme-mir-71 MIR-71 CUCACUA None MIMAT0024985 HE671256 336024 336085 + Bilateria Bilateria No 1
Hme-Mir-76 hme-mir-981 MIR-76 UCGUUGU None MIMAT0024999 HE669806 67255 67312 + Bilateria Bilateria No 1
Hme-Mir-87 hme-mir-87 MIR-87 UGAGCAA None MIMAT0024989 HE668834 53115 53175 + Protostomia Protostomia No
Hme-Mir-92-o61 hme-mir-92a MIR-92 AUUGCAC None MIMAT0024993 HE672043 128928 128983 + H. melpomene Bilateria No
Hme-Mir-92-o62 hme-mir-92b MIR-92 AUUGCAC None MIMAT0024994 HE672043 129073 129130 + H. melpomene Bilateria No
Hme-Mir-96-P2 hme-mir-263b MIR-96 UUGGCAC MIMAT0024950 None HE670415 2372 2433 - Bilateria Bilateria No 1 1
Hme-Mir-96-P3 hme-mir-263a MIR-96 AUGGCAC MIMAT0024949 None HE672064 563354 563413 + Bilateria Bilateria No 1
Hme-Mir-124 hme-mir-124 MIR-124 AAGGCAC None MIMAT0024937 HE672073 380452 380509 + Bilateria Bilateria No 1
Hme-Mir-133 hme-mir-133 MIR-133 UGGUCCC None MIMAT0024938 HE672073 1153888 1153948 - Bilateria Bilateria No 1
Hme-Mir-137 hme-mir-137 MIR-137 UAUUGCU None MIMAT0024939 HE671482 4162 4222 + Bilateria Bilateria No 1
Hme-Mir-184 hme-mir-184 MIR-184 GGACGGA None MIMAT0024943 HE670778 175932 175988 + Bilateria Bilateria No 1
Hme-Mir-190 hme-mir-190 MIR-190 GAUAUGU MIMAT0024944 None HE671536 265220 265277 - Bilateria Bilateria No 1
Hme-Mir-193-P1 hme-mir-193 MIR-193 ACUGGCC MIMAT0020538 MIMAT0020539 HE667780 841382 841438 + Bilateria Bilateria No 1
Hme-Mir-193-P2 hme-mir-2788 MIR-193 GGGGUUU MIMAT0020536 MIMAT0020537 HE667780 843563 843618 + Bilateria Bilateria No 1 1
Hme-Mir-210-P3 hme-mir-210 MIR-210 UUGUGCG None MIMAT0024947 HE670563 209742 209798 - H. melpomene Bilateria No 1
Hme-Mir-210-P4 hme-mir-3286 MIR-210 UGUGCGU None MIMAT0024979 HE670563 208640 208702 - H. melpomene Bilateria No 1
Hme-Mir-216-P1 None MIR-216 AAUCUCA None None HE669534 42003 42127 + Bilateria Bilateria No
Hme-Mir-216-P2 hme-mir-283 MIR-216 AAUAUCA MIMAT0024969 None HE669534 41197 41253 + Bilateria Bilateria Unknown 1
Hme-Mir-252-P1 hme-mir-252 MIR-252 UAAGUAC MIMAT0024948 None HE669201 11729 11788 - Bilateria Bilateria Unknown 1
Hme-Mir-252-P2 hme-mir-2797 MIR-252 UAAGUAG MIMAT0024963 None HE669201 24262 24317 - Bilateria Bilateria Unknown 1
Hme-Mir-275 None MIR-275 CAGGUAC None None HE669248 31749 31804 + Arthropoda Arthropoda No 1
Hme-Mir-276 hme-mir-276 MIR-276 AGGAACU MIMAT0024954 None HE671577 38337 38393 + Arthropoda Arthropoda No 1 1
Hme-Mir-277 hme-mir-277 MIR-277 AAAUGCA None MIMAT0024959 HE667979 12468 12551 - Protostomia Protostomia No 1
Hme-Mir-278 hme-mir-278 MIR-278 CGGUGGG None MIMAT0024960 HE671244 255776 255833 + Bilateria Bilateria No
Hme-Mir-279-o31 hme-mir-279a MIR-279 GACUAGA None MIMAT0024961 HE668381 19337 19392 - H. melpomene Protostomia No 1
Hme-Mir-279-o32 hme-mir-279b MIR-279 GACUAGA None MIMAT0024964 HE670979 5122 5178 - H. melpomene Protostomia No 1 1
Hme-Mir-279-o33 hme-mir-279c MIR-279 GACUAGA None MIMAT0024966 HE671887 111974 112030 + H. melpomene Protostomia No 1 1
Hme-Mir-279-o34 hme-mir-279d MIR-279 GACUAGA None MIMAT0024965 HE670979 4653 4713 - H. melpomene Protostomia No 1
Hme-Mir-281 hme-mir-281 MIR-281 AGAGAGC None MIMAT0024967 HE671164 1105686 1105744 + Bilateria Bilateria No 1
Hme-Mir-282 hme-mir-282 MIR-282 AGCCUCU MIMAT0024968 None HE670913 81384 81446 + Pancrustacea Pancrustacea No 1
Hme-Mir-305 hme-mir-305 MIR-305 UUGUACU MIMAT0024974 None HE669248 31865 31924 + Ecdysozoa Ecdysozoa No 1
Hme-Mir-306 hme-mir-306 MIR-306 CAGGUAC MIMAT0024975 None HE669612 9837 9892 - Pterygota Pterygota No
Hme-Mir-316 hme-mir-316 MIR-316 GUCUUUU MIMAT0024978 None HE671816 56648 56709 - Pancrustacea Pancrustacea No
Hme-Mir-317 None MIR-317 GAACACA None None HE667979 27841 27903 - Protostomia Protostomia No 1
Hme-Mir-375 None MIR-375 UUGUUCG None None HE671996 113010 113065 - Bilateria Bilateria No 1
Hme-Mir-750 None MIR-750 CAGAUCU None None HE669540 33040 33101 + Protostomia Protostomia No 1
Hme-Mir-927-P1 hme-mir-927 MIR-927 UUAGAAU MIMAT0024990 None HE669889 61418 61478 + Pterygota Pterygota No 1
Hme-Mir-927-P2 None MIR-927 UUAGAAU None None HE667975 146591 146653 - Pterygota Pterygota No 1
Hme-Mir-929 hme-mir-929 MIR-929 AAUUGAC MIMAT0024992 None HE672076 29049 29106 + Pterygota Pterygota No 1
Hme-Mir-932 hme-mir-932 MIR-932 CAAUUCC MIMAT0024995 None HE670498 24471 24528 + Neoptera Neoptera No 1
Hme-Mir-965 hme-mir-965 MIR-965 GGGAGAA None MIMAT0024996 HE670498 371732 371791 - Pancrustacea Pancrustacea No 1
Hme-Mir-970 hme-mir-970 MIR-970 CAUAAGA None MIMAT0024997 HE669340 23237 23299 + Endopterygota Endopterygota No 1 1
Hme-Mir-971 hme-mir-971 MIR-971 ACUCUAA None MIMAT0024998 HE670834 76896 76955 + Pterygota Pterygota No 1
Hme-Mir-988 None MIR-988 CCCUUGU None None HE672081 475628 475688 + Diptera plus Lepidoptera Diptera plus Lepidoptera No 1 1
Hme-Mir-989-P1 None MIR-989 GUGAUGU None None FARY01123984.1 1092 1151 - H. melpomene Endopterygota No 1
Hme-Mir-989-P2 None MIR-989 GUGAUGU None None FARY01123984.1 1726 1785 - H. melpomene Endopterygota No 1
Hme-Mir-1000 hme-mir-1000 MIR-1000 UAUUGUC MIMAT0024933 None HE669583 87273 87327 + Pterygota Pterygota No 1
Hme-Mir-1175 hme-mir-1175 MIR-1175 AGUGGAG MIMAT0024935 None HE669540 33194 33255 + Protostomia Protostomia No 1
Hme-Mir-2001 None MIR-2001 UUGUGAC None None HE669201 27587 27644 - Bilateria Bilateria No
Hme-Mir-2755 hme-mir-2755 MIR-2755 ACCCUGU None MIMAT0024952 HE671518 150664 150723 - H. melpomene H. melpomene No
Hme-Mir-2756 hme-mir-2756 MIR-2756 CCCUGUA MIMAT0024953 None HE672079 296638 296695 + H. melpomene H. melpomene No 1
Hme-Mir-2763-v1 hme-mir-2763 MIR-2763 AUUAUGC None MIMAT0024955 HE672065 139460 139521 - H. melpomene H. melpomene No 1 1
Hme-Mir-2763-v2 hme-mir-2763 MIR-2763 UAUUAUG None MIMAT0024955 HE672065 139460 139521 - H. melpomene H. melpomene No 1
Hme-Mir-2765 hme-mir-2765 MIR-2765 GGUAACU MIMAT0024956 None HE669320 70094 70148 + Pancrustacea Pancrustacea No 1
Hme-Mir-2766-P1 None MIR-2766 CAGUCUU None None HE670389 111848 111906 + H. melpomene H. melpomene No 1
Hme-Mir-2766-P2 None MIR-2766 CAGUCUU None None HE670430 103144 103202 - H. melpomene H. melpomene No 1
Hme-Mir-2767 hme-mir-2767 MIR-2767 AAGUAAA MIMAT0024957 None HE671115 285746 285800 + H. melpomene H. melpomene No 1
Hme-Mir-2786 None MIR-2786 UCUCUCG None None HE671033 61257 61318 + H. melpomene H. melpomene Unknown 1 1
Hme-Mir-2796 hme-mir-2796 MIR-2796 UAGGCCG None MIMAT0024962 HE671853 30010 30066 + Pterygota Pterygota Unknown 1
Hme-Mir-3327 hme-mir-3327 MIR-3327 UAUGUAA MIMAT0024981 None HE671311 86391 86452 - H. melpomene H. melpomene No 1
Hme-Mir-3338 hme-mir-3338 MIR-3338 UGUACUU None MIMAT0024982 HE671311 86526 86586 - H. melpomene H. melpomene No 1
Hme-Mir-6301-P1 hme-mir-6301-1 MIR-6301 CAGUUCA MIMAT0025004 MIMAT0025005 HE671389 229326 229379 - H. melpomene H. melpomene No 1 1
Hme-Mir-6301-P2 hme-mir-6301-2 MIR-6301 CAGUUCA MIMAT0026470 MIMAT0025005 HE671389 229572 229629 - H. melpomene H. melpomene No 1 1
Hme-Mir-6302-P1 hme-mir-6302-1 MIR-6302 AAACUCA MIMAT0025006 MIMAT0025007 HE671389 229935 229991 - H. melpomene H. melpomene No 1
Hme-Mir-6302-P2 hme-mir-6302-2 MIR-6302 AAACUCA MIMAT0026464 MIMAT0025007 HE671389 230471 230526 - H. melpomene H. melpomene No 1
Hme-Mir-6304 hme-mir-6304 MIR-6304 UUCCAGU None MIMAT0025009 HE670412 210116 210172 + H. melpomene H. melpomene No 1 1
Hme-Mir-6305 hme-mir-6305 MIR-6305 UAUGCUA MIMAT0025010 MIMAT0025011 HE670942 235843 235906 - H. melpomene H. melpomene No 1
Hme-Mir-6307 hme-mir-6307 MIR-6307 AAGCUCG None MIMAT0025014 HE670993 20663 20723 - H. melpomene H. melpomene No 1
Hme-Mir-10485 None MIR-10485 CAGUCUA None None HE670498 254375 254430 + H. melpomene H. melpomene No 1
Hme-Novel-1 None HME-NOVEL-1 UUCGCCU None None HE672018 201434 201493 + H. melpomene H. melpomene No 1
Hme-Novel-2 None HME-NOVEL-2 CCAAUAA None None HE671335 621364 621419 + H. melpomene H. melpomene No
Hme-Novel-3 None HME-NOVEL-3 GCGGAGA None None HE671335 621504 621559 - H. melpomene H. melpomene No 1
Hme-Novel-4 None HME-NOVEL-4 UGAUGAU None None HE671687 151159 151219 + H. melpomene H. melpomene No 1
Hme-Novel-5-P1 None HME-NOVEL-5 UUGCCUU None None HE671980 159936 159991 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P2 None HME-NOVEL-5 UUGCCUU None None HE671980 160228 160283 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P3a None HME-NOVEL-5 UUGCCUU None None HE671980 160606 160661 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P3b None HME-NOVEL-5 UUGCCUU None None HE671980 160418 160473 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P4 None HME-NOVEL-5 UUGCCUU None None HE671980 160796 160851 - H. melpomene H. melpomene No 1 1
Hme-Novel-5-P5 None HME-NOVEL-5 UUGCCUU None None HE671980 160985 161040 - H. melpomene H. melpomene No 1
Hme-Novel-6 None HME-NOVEL-6 AGUCGAG None None HE672042 72357 72421 + H. melpomene H. melpomene No
Hme-Novel-7 None HME-NOVEL-7 UGCGUUG None None HE672065 650060 650136 - H. melpomene H. melpomene No 1

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