MirGeneDB ID | Hme-Novel-5-P4 |
Family name |
HME-NOVEL-5 (all species) |
Seed |
UUGCCUU |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
|
Paralogues |
Hme-Novel-5-P1
Hme-Novel-5-P2
Hme-Novel-5-P3a
Hme-Novel-5-P3b
Hme-Novel-5-P5
|
Orthologues |
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
H. melpomene
|
Genome context (Hmel_1) |
HE671980: 160228-160283 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAAGUGAAAUAUUUGAUGUGAUGGCGGAUGGGGGACUACCUAAUUGCAAGGUGUAUCUAUCGACUUUGCCUUUAGUUACUUUCCGAUCUGUUGGUGCACAUGACUACAAAUGAAGA
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|
Structure | 10 20 30 40 50
UAAGUGAAAUAUUUGAU--| AU G GG C C UU GUAU
GUG GGCGGAU GG A UA CUAA GCAAGGU C
CGU UUGUCUA CC U AU GAUU CGUUUCA U
AGAAGUAAACAUCAGUACA^ GG G UU C U UC GCUA
110 100 90 80 70 60 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Novel-5-P4_5p* |
mirBase accession | None |
Sequence |
0- GGGGACUACCUAAUUGCAAGGU -22
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|
Mature sequence |
Hme-Novel-5-P4_3p |
mirBase accession | None |
Sequence |
34- UUUGCCUUUAGUUACUUUCCGA -56
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|