MirGeneDB ID | Hme-Novel-5-P3b |
Family name |
HME-NOVEL-5 (all species) |
Seed |
UUGCCUU |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
|
Paralogues |
Hme-Novel-5-P1
Hme-Novel-5-P2
Hme-Novel-5-P3a
Hme-Novel-5-P4
Hme-Novel-5-P5
|
Orthologues |
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
H. melpomene
|
Genome context (Hmel_1) |
HE671980: 160418-160473 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACGUAAAUUAAAUAUUUGUGACGGCAGAUGGGAGACUACCUAAUUGCAAGGUGUAUCUAUCGACUUUGCCUUUAGUUAGUUUCCGGUCUUUCAGUGCACAUGUCUACAGGAUGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACGUAAAUUAAAUAUUU--| AC C G C UU GUAU
GUG GG AGAU GGAGACUA CUAA GCAAGGU C
CGU CU UCUG CCUUUGAU GAUU CGUUUCA U
GAAGUAGGACAUCUGUACA^ GA U G U UC GCUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Novel-5-P3b_5p* |
mirBase accession | None |
Sequence |
0- GGAGACUACCUAAUUGCAAGGU -22
Get sequence
|
Mature sequence |
Hme-Novel-5-P3b_3p |
mirBase accession | None |
Sequence |
34- UUUGCCUUUAGUUAGUUUCCGG -56
Get sequence
|