Mir-216-P1

MirGeneDB ID

Hme-Mir-216-P1

Family name

MIR-216 (all species)

Species

Longwing butterfly (Heliconius melpomene)

MiRBase ID

hme-mir-283

Paralogues

Hme-Mir-216-P2

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Asu-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dmo-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Efe-Mir-216-P1a Efe-Mir-216-P1b Esc-Mir-216-P1 Gpa-Mir-216-P1 Hru-Mir-216-P1 Lan-Mir-216-P1e Lan-Mir-216-P1f Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mgi-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Sma-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(Hmel_1)

HE669534: 41197-41253 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P1)

Mir-216-P1 HE669534: 41197-41253 [+] Ensembl
Mir-216-P2 HE669534: 42003-42127 [+] Ensembl
Mir-12 HE669534: 42572-42850 [+] Ensembl

Seed

AAUAUCA

Precursor
(pre-Mir +30nt flank)

GAUGAAAUUUAGAAAAUUCGACAUUAGACUAAAUAUCAGCUGGUAAUUCUGGGGUCGUUCACCCCCAGGUUAUCAGUUGGUAUAAAGUUGUGUGUCGCAUUACUUCGAACAAACAGA

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Structure

        10          20        30        40        50        
GAUGAAAUUUAGAAAAUU--|     UA    AA               U     GUCG 
                    CGACAU  GACU  AUAUCAGCUGGUAAU CUGGG    U
                    GCUGUG  UUGA  UAUGGUUGACUAUUG GACCC    U
AGACAAACAAGCUUCAUUAC^     UG    AA               -     CCAC 
     110       100        90        80        70         60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Fe	Fe	Fe	Fe	Ma	Ma

Mature sequence

Hme-Mir-216-P1_5p

mirBase accession

MIMAT0024969

Sequence

0- AAAUAUCAGCUGGUAAUUCUGGG -23

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Star sequence

Hme-Mir-216-P1_3p*

mirBase accession

None

Sequence

35- CAGGUUAUCAGUUGGUAUAAAG -57

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