MirGeneDB 2.1

MirGeneDB ID

Lan-Mir-216-P1e

Family name MIR-216 (all species)
Seed AAUAUCA
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-216-P1f  Lan-Mir-216-P2e  Lan-Mir-216-P2f 
Orthologues Aae-Mir-216-P1  Asu-Mir-216-P1  Bge-Mir-216-P1  Cgi-Mir-216-P1  Cte-Mir-216-P1  Dan-Mir-216-P1  Dma-Mir-216-P1  Dme-Mir-216-P1  Dmo-Mir-216-P1  Dpu-Mir-216-P1  Dsi-Mir-216-P1  Dya-Mir-216-P1  Esc-Mir-216-P1  Hme-Mir-216-P1  Lgi-Mir-216-P1  Tca-Mir-216-P1 
Node of Origin (locus) L. anatina
Node of Origin (family) Bilateria
Genome context
(LinAna_1.0)
LFEI01001594: 15169-15226 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGGUGUUGUCGUGUUGUGCGCGGUUUCCAAAUAUCAGCUGGUAAUUCUGGGCUCUUAAUUUGCUCAGAAUUCUAUCUGGUAUUGGGGAAUCCUUGCACCUCUCACUGUGUCUAUAA
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Structure
        10         20        30         40        50         
GUUGGUGUUGUCGUGUU-     C  U    A-|       C   U         CUCUU 
                  GUGCG GG UUCC  AAUAUCAG UGG AAUUCUGGG     \
                  CACGU CC AAGG  UUAUGGUC AUC UUAAGACUC     A
AAUAUCUGUGUCACUCUC     U  U    GG^       U   -         GUUUA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14)
Tissue expression
 +
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Mature sequence

Lan-Mir-216-P1e_5p

mirBase accessionNone
Sequence
0- AAAUAUCAGCUGGUAAUUCUGGG -23
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Star sequence

Lan-Mir-216-P1e_3p* (predicted)

mirBase accessionNone
Sequence
36- CAGAAUUCUAUCUGGUAUUGGG -58
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