Mir-216-P1

MirGeneDB ID

Mgi-Mir-216-P1

Family name

MIR-216 (all species)

Species

Pacific oyster (Magallana gigas)

MiRBase ID

Paralogues

Mgi-Mir-216-P2d

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Asu-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dmo-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Efe-Mir-216-P1a Efe-Mir-216-P1b Esc-Mir-216-P1 Gpa-Mir-216-P1 Hme-Mir-216-P1 Hru-Mir-216-P1 Lan-Mir-216-P1e Lan-Mir-216-P1f Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Sma-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

Nephrozoa

Node of Origin (family)

Nephrozoa

Genome context
(CGI_GCA_000297895.1)

scaffold1785: 69359-69417 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-216-P1)

Mir-12 scaffold1785: 68054-68110 [-] Ensembl
Mir-216-P2d scaffold1785: 68810-68867 [-] Ensembl
Mir-216-P1 scaffold1785: 69359-69417 [-] Ensembl

Seed

AAUAUCA

Precursor
(pre-Mir +30nt flank)

CUGCCAGGGUGAACGAGGCGACUGGUUGUCUAAUAUCAGCUGGUAAUCCUGAGCUGGCGACGACACUCAGGGUGCUCACUGAUAUACGAUAAACAGACCACCAUAUUGAACACAUCGGG

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Structure

        10        20          30        40        50         
CUGCCAGGGUGAACGAGGCGA--|  G     UA       CU    A       CUGGC 
                       CUG UUGUC  AUAUCAG  GGUA UCCUGAG     G
                       GAC AAUAG  UAUAGUC  UCGU GGGACUC     A
GGGCUACACAAGUUAUACCACCA^  A     CA       AC    -       ACAGC 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

Tissue expression

A-	D-	D-	F-	L-	Ea	Eg	Fe	Gi	Ha	He	Ju	La	Ma	Ma	Ma	Pe	Re	Sp	Um

Mature sequence

Mgi-Mir-216-P1_5p

mirBase accession

None

Sequence

0- UAAUAUCAGCUGGUAAUCCUGAG -23

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Star sequence

Mgi-Mir-216-P1_3p*

mirBase accession

None

Sequence

37- CAGGGUGCUCACUGAUAUACGA -59

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