Mir-216-P1a

MirGeneDB ID

Efe-Mir-216-P1a

Family name

MIR-216 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-216-P1b Efe-Mir-216-P2c

Orthologues

Aae-Mir-216-P1 Aga-Mir-216-P1 Agr-Mir-216-P1 Asu-Mir-216-P1 Bge-Mir-216-P1 Cte-Mir-216-P1 Dan-Mir-216-P1 Dgr-Mir-216-P1 Dlo-Mir-216-P1 Dma-Mir-216-P1 Dme-Mir-216-P1 Dmo-Mir-216-P1 Dpu-Mir-216-P1 Dsi-Mir-216-P1 Dya-Mir-216-P1 Eba-Mir-216-P1 Esc-Mir-216-P1 Gpa-Mir-216-P1 Hme-Mir-216-P1 Hru-Mir-216-P1 Lgi-Mir-216-P1 Lhy-Mir-216-P1 Mgi-Mir-216-P1 Mom-Mir-216-P1 Ofu-Mir-216-P1 Pau-Mir-216-P1 Pca-Mir-216-P1 Pcr-Mir-216-P1 Pdu-Mir-216-P1 Pve-Mir-216-P1 Rph-Mir-216-P1 Sma-Mir-216-P1 Snu-Mir-216-P1 Tca-Mir-216-P1 War-Mir-216-P1

Node of Origin (locus)

E. fetida

Node of Origin (family)

Nephrozoa

Genome context
(Efe_combined)

Efet.01.10466: 6597-6657 [-]

Seed

AAUAUCA

Precursor
(pre-Mir +30nt flank)

UGAAUGAGCUCCGCUUGGAAGUUGUCUGUUUAAUAUCAGCAGGUAAAUCUGAGCUAAACGACAGAAUCUCAGAGUGCCGCCUGGUAUUGUCCAGACAACGCAUGCUGUCAACAGCGAAGUC

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Structure

        10        20          30        40        50        60
UGAAUGAGCUCCGCUUGGAA--|       UU         CA    AA      CUAAAC 
                      GUUGUCUG  UAAUAUCAG  GGUA  UCUGAG      G
                      CAACAGAC  GUUAUGGUC  CCGU  AGACUC      A
CUGAAGCGACAACUGUCGUACG^       CU         CG    G-      UAAGAC 
 .       110       100        90        80         70

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Efe-Mir-216-P1a_5p

mirBase accession

None

Sequence

0- UAAUAUCAGCAGGUAAAUCUGAG -23

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Star sequence

Efe-Mir-216-P1a_3p*

mirBase accession

None

Sequence

39- CAGAGUGCCGCCUGGUAUUGUC -61

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