MirGeneDB ID | Efe-Mir-216-P1a |
Family name |
MIR-216 (all species) |
Seed |
AAUAUCA |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-216-P1b
Efe-Mir-216-P2
|
Orthologues |
Aae-Mir-216-P1
Asu-Mir-216-P1
Bge-Mir-216-P1
Cgi-Mir-216-P1
Cte-Mir-216-P1
Dan-Mir-216-P1
Dma-Mir-216-P1
Dme-Mir-216-P1
Dmo-Mir-216-P1
Dpu-Mir-216-P1
Dsi-Mir-216-P1
Dya-Mir-216-P1
Esc-Mir-216-P1
Hme-Mir-216-P1
Lgi-Mir-216-P1
Tca-Mir-216-P1
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.10466: 6597-6657 [-]
|
Precursor (pre-Mir +30nt flank) |
UGAAUGAGCUCCGCUUGGAAGUUGUCUGUUUAAUAUCAGCAGGUAAAUCUGAGCUAAACGACAGAAUCUCAGAGUGCCGCCUGGUAUUGUCCAGACAACGCAUGCUGUCAACAGCGAAGUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UGAAUGAGCUCCGCUUGGAA--| UU CA AA CUAAAC
GUUGUCUG UAAUAUCAG GGUA UCUGAG G
CAACAGAC GUUAUGGUC CCGU AGACUC A
CUGAAGCGACAACUGUCGUACG^ CU CG G- UAAGAC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on both arms. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-216-P1a_5p |
mirBase accession | None |
Sequence |
0- UAAUAUCAGCAGGUAAAUCUGAG -23
Get sequence
|
Star sequence |
Efe-Mir-216-P1a_3p* |
mirBase accession | None |
Sequence |
39- CAGAGUGCCGCCUGGUAUUGUC -61
Get sequence
|