| MirGeneDB ID | Hme-Mir-1000 |
|---|
| Family name |
MIR-1000 (all species) |
|---|
| Seed |
UAUUGUC |
|---|
| Species |
Longwing butterfly (Heliconius melpomene) |
|---|
| MiRBase ID |
hme-mir-1000
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Bge-Mir-1000
Dan-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Tca-Mir-1000
|
|---|
| Node of Origin (locus) |
Neoptera
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(Hmel_1) |
HE669583: 87273-87327 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CCUGAACACCGAAGGAAACACUUCUCGGCCAUAUUGUCCUGUCACAGCAGUAAGUUCAAUCUACUGCUGUAGCCGGACAUGCCGGUUGAGUUGUGUAUAACUACAAUUAAAGAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUGAACACCGAAGGAA--| UU AUAU U UC AAGUU
ACAC CUCGGCC UGUCC G ACAGCAGU \
UGUG GAGUUGG ACAGG C UGUCGUCA C
CAAGAAAUUAACAUCAAUA^ UU CCGU C GA UCUAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut +1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Hme-Mir-1000_5p |
| mirBase accession | MIMAT0024933 |
|---|
| Sequence |
0- AUAUUGUCCUGUCACAGCAGU -21
Get sequence
|
|---|
| Star sequence |
Hme-Mir-1000_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UGCUGUAGCCGGACAUGCCGG -55
Get sequence
|
|---|
