| MirGeneDB ID | Aae-Mir-1000-P1 |
|---|
| Family name |
MIR-1000 (all species) |
|---|
| Seed |
UAUUGUC |
|---|
| Species |
Yellow fever mosquito (Aedes aegypti) |
|---|
| MiRBase ID |
aae-mir-1000-1
|
|---|
| Paralogues |
Aae-Mir-1000-P2
|
|---|
| Orthologues |
Bge-Mir-1000
Dan-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
|
|---|
| Node of Origin (locus) |
A. aegypti
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(Aaeg_L3) |
supercont1.187: 325478-325532 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACCAUCCGCGAUUUUUGCUAGAAACCGAUUAUAUUGUCCUGUCACAGCAGUACUGUUACAAAUUUACUGUUGUUUCGGGACAUUUACAUUGAUUCUAGCCGUCACAACGGGAUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCAUCCGCGAUUUUUGC| AC UAUAU UC CUGUU
UAGAA CGAU UGUCCUG ACAGCAGUA A
AUCUU GUUA ACAGGGC UGUUGUCAU C
CGUAGGGCAACACUGCCG^ A- CAUUU UU UUAAA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Aae-Mir-1000-P1_5p |
| mirBase accession | MIMAT0014297 |
|---|
| Sequence |
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
|
|---|
| Star sequence |
Aae-Mir-1000-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
34- UACUGUUGUUUCGGGACAUUU -55
Get sequence
|
|---|
