MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-34-P11

Family name MIR-34 (all species)
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-34-1
Paralogues Hme-Mir-34-P12 
Orthologues Aae-Mir-34  Aga-Mir-34  Agr-Mir-34  Asu-Mir-34  Bge-Mir-34  Cbr-Mir-34  Cel-Mir-34  Cin-Mir-34  Cte-Mir-34  Dan-Mir-34  Dlo-Mir-34  Dma-Mir-34  Dme-Mir-34  Dmo-Mir-34  Dpu-Mir-34  Dsi-Mir-34  Dya-Mir-34  Efe-Mir-34  Esc-Mir-34  Gpa-Mir-34  Gsp-Mir-34  Hmi-Mir-34  Hru-Mir-34  Isc-Mir-34  Lgi-Mir-34  Lhy-Mir-34  Llo-Mir-34  Mgi-Mir-34  Mom-Mir-34  Npo-Mir-34  Obi-Mir-34  Ofu-Mir-34  Ovu-Mir-34  Pau-Mir-34  Pca-Mir-34  Pdu-Mir-34  Pfl-Mir-34  Pmi-Mir-34  Pve-Mir-34  Rph-Mir-34  Sko-Mir-34  Snu-Mir-34  Spu-Mir-34  Tca-Mir-34  Tur-Mir-34  War-Mir-34 
Node of Origin (locus) H. melpomene
Node of Origin (family) Bilateria
Genome context
(Hmel_1)		 HE667979: 380-438 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-34-P11)		 Mir-34-P11 HE667979: 380-438 [-] Ensembl
Mir-277 HE667979: 12468-12551 [-] Ensembl
Mir-317 HE667979: 27841-27903 [-] Ensembl
Seed GGCAGUG
Precursor
(pre-Mir +30nt flank)		 
GAAGCAGAGAGAAGUAUAGGUAGGCCACAGUGGCAGUGUGGUUAGCUGGUUGUUUAGUCACAGCAACAGCCAGUAACGCCACUGCCUCUGCGUCUUGCCUGAAGCCGCAAAAGAAAUCU
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Structure
        10          20        30        40        50         
GAAGCAGAGAGAAGUAU--|      CCA   U       UG    G         UAGU 
                   AGGUAGG   CAG GGCAGUG  GUUA CUGGUUGUU    C
                   UCCGUUC   GUC CCGUCAC  CAAU GACCGACAA    A
UCUAAAGAAAACGCCGAAG^      UGC   U       CG    -         CGAC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Fe Fe Fe Fe Ma Ma
Mature sequence

Hme-Mir-34-P11_5p
mirBase accessionMIMAT0024983
Sequence 
0- UGGCAGUGUGGUUAGCUGGUUGUU -24
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Star sequence

Hme-Mir-34-P11_3p*
mirBase accessionNone
Sequence 
36- CAGCCAGUAACGCCACUGCCUCU -59
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