MirGeneDB 2.1

MirGeneDB ID

Hme-Mir-275

Family name MIR-275 (all species)
Seed CAGGUAC
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID
Paralogues
Orthologues Aae-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Isc-Mir-275  Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P4-v2  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7  Tca-Mir-275 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(Hmel_1)
HE669248: 31749-31804 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAGUGUCGCCGUCGGGAGCGGUGGCGUCGCGCGCUACUCUGGCGCCGGGGCUGUUCAGCGAGUCAGGUACCUGAAGUAGCGCGCGGGGCCUCCGCUCGGGUCGCCGCCGGAGCCA
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Structure
        10          20        30         40        50       
GUAGUGUCGCCGUCGGG--     U   G           -| U  CG  GG    GUU 
                   AGCGG GGC UCGCGCGCUAC UC GG  CC  GGCU   C
                   UCGCC CCG GGCGCGCGAUG AG CC  GG  CUGA   A
ACCGAGGCCGCCGCUGGGC     U   G           A^ U  AU  A-    GCG 
    110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-275_5p*

mirBase accessionNone
Sequence
0- CGCGCUACUCUGGCGCCGGGGCU -23
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Mature sequence

Hme-Mir-275_3p

mirBase accessionNone
Sequence
33- UCAGGUACCUGAAGUAGCGCGCG -56
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