MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-275-P3

Family name MIR-275 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-275-P4-v1  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7 
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dpu-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Tca-Mir-275 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Arthropoda
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013674081.1: 9199-9261 [-] Ensembl
Seed CAGGUAC
Precursor
(pre-Mir +30nt flank)		 
UUACAUCAGUUUCUGCCCGGCGUGAUUCCCACGUGCUGCAUCAGGUGCUUGUGACUGUGCUGUACAAAGUCAGGUACCUGAAGUAGCGCGCGGAGAAUCCCGGGGAAAAAUCUUCUUGGUAGU
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Structure
        10            20         30        40        50        60  
UUACAUCAGUUUCUGCC----|  CGU     -  A        A         UG     GUGCU 
                     CGG   GAUUC CC CGUGCUGC UCAGGUGCU  UGACU     \
                     GCC   CUAAG GG GCGCGAUG AGUCCAUGG  ACUGA     G
UGAUGGUUCUUCUAAAAAGGG^  ---     A  C        A         --     AACAU 
 120       110       100           90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-275-P3_5p*
mirBase accessionNone
Sequence 
0- ACGUGCUGCAUCAGGUGCUUGUGACU -26
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Mature sequence

Lpo-Mir-275-P3_3p
mirBase accessionNone
Sequence 
39- UCAGGUACCUGAAGUAGCGCGCGG -63
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