MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-275

Family name MIR-275 (all species)
Species Common water flea (Daphnia pulex)
MiRBase ID dpu-mir-275
Paralogues
Orthologues Aae-Mir-275  Aga-Mir-275  Bge-Mir-275  Csc-Mir-275  Dan-Mir-275  Dlo-Mir-275  Dma-Mir-275  Dme-Mir-275  Dmo-Mir-275  Dsi-Mir-275  Dya-Mir-275  Gpa-Mir-275  Hme-Mir-275  Isc-Mir-275  Lpo-Mir-275-P3  Lpo-Mir-275-P4-v1  Lpo-Mir-275-P5  Lpo-Mir-275-P6  Lpo-Mir-275-P7  Tca-Mir-275 
Node of Origin (locus) Arthropoda
Node of Origin (family) Arthropoda
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_4: 1790740-1790804 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-275)		 Mir-275 DAPPUscaffold_4: 1790740-1790804 [+] Ensembl
Mir-305 DAPPUscaffold_4: 1791164-1791251 [+] Ensembl
Seed CAGGUAC
Precursor
(pre-Mir +30nt flank)		 
GACAAUCAUUUCAUAUUACUGGCCACUCCCCGUGCUGCGACAGGUGCUUCCGGCUGUGUUAAUAAUUGCGAGUCAGGUACCUGAAGUAGCGCGCGGAGUGGCUCGGAACGAUCUCCAUUUUACUG
Get precursor sequence
Structure
        10         20         30        40        50        60   
GACAAUCAUUUCAUAUUA-   -|       C        GA         CC    GUGUUAA 
                   CUG GCCACUCC CGUGCUGC  CAGGUGCUU  GGCU       \
                   GGC CGGUGAGG GCGCGAUG  GUCCAUGGA  CUGA       U
GUCAUUUUACCUCUAGCAA   U^       C        AA         --    GCGUUAA 
   120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Star sequence

Dpu-Mir-275_5p*
mirBase accessionNone
Sequence 
0- CGUGCUGCGACAGGUGCUUCCGGCU -25
Get sequence
Mature sequence

Dpu-Mir-275_3p
mirBase accessionMIMAT0012651
Sequence 
42- UCAGGUACCUGAAGUAGCGCGCG -65
Get sequence