| MirGeneDB ID | Hme-Mir-1175 |
|---|
| Family name |
MIR-1175 (all species) |
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| Seed |
AGUGGAG |
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| Species |
Longwing butterfly (Heliconius melpomene) |
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| MiRBase ID |
hme-mir-1175
|
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| Paralogues |
|
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| Orthologues |
Aae-Mir-1175
Asu-Mir-1175
Bge-Mir-1175
Bpl-Mir-1175
Cgi-Mir-1175
Cte-Mir-1175
Dan-Mir-1175
Dma-Mir-1175
Dme-Mir-1175
Dmo-Mir-1175
Dpu-Mir-1175
Dsi-Mir-1175
Dya-Mir-1175-P3
Dya-Mir-1175-P4
Efe-Mir-1175-P1
Efe-Mir-1175-P2
Isc-Mir-1175
Lan-Mir-1175
Lgi-Mir-1175
Lpo-Mir-1175-P5
Lpo-Mir-1175-P6
Lpo-Mir-1175-P7
Npo-Mir-1175
Obi-Mir-1175
Ovu-Mir-1175
Sme-Mir-1175-P8
Sme-Mir-1175-P9
Tca-Mir-1175
|
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| Node of Origin (locus) |
Protostomia
|
|---|
| Node of Origin (family) |
Protostomia
|
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Genome context
(Hmel_1) |
HE669540: 33194-33255 [+]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUCCUAAUGAUAUAUUAAGCGUUGAGGAUUAAGUGGAGGUGUGAUCUCUUCACUUUUUCAAUUUAAAGUGAGAUUCAACUCCUCCAACUUAACCCGAGCCGCAAGUACUACUGACGUGGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCCUAAUGAUAUAUUAA-- UUGA A - U --| UUCACUUUUU
GCG GG UUAAG UGGAGG GU GAUCUC \
CGC CC AAUUC ACCUCC CA UUAGAG C
AAAGGUGCAGUCAUCAUGAA CGAG C A U AC^ UGAAAUUUAA
120 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Hme-Mir-1175_5p |
| mirBase accession | MIMAT0024935 |
|---|
| Sequence |
0- AAGUGGAGGUGUGAUCUCUUC -21
Get sequence
|
|---|
| Co-mature sequence |
Hme-Mir-1175_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGAUUCAACUCCUCCAACUUAA -62
Get sequence
|
|---|
