MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-1175

Family name MIR-1175 (all species)
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-755
Paralogues
Orthologues Aae-Mir-1175  Aga-Mir-1175-v1  Agr-Mir-1175  Asu-Mir-1175  Ava-Mir-1175-P10  Ava-Mir-1175-P11  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Dya-Mir-1175-P3  Dya-Mir-1175-P4  Eba-Mir-1175  Efe-Mir-1175-P1  Efe-Mir-1175-P2  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Lpo-Mir-1175-P5  Lpo-Mir-1175-P6  Lpo-Mir-1175-P7  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pcr-Mir-1175-P12-v1  Pcr-Mir-1175-P13  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sme-Mir-1175-P8  Sme-Mir-1175-P9  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  Tur-Mir-1175-v1  War-Mir-1175 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_000237925.5_SM_V9_genomic)		 OU426848.1: 7214600-7214709 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1175)		 Mir-1175 OU426848.1: 7214600-7214709 [-] UCSC Ensembl
Mir-750 OU426848.1: 7214832-7215033 [-] UCSC Ensembl
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
CAAAUAAUCACUGUUUUGUGUGGUAUGUACAGUUGGAGUUUUUGUUUCUGCACCAACAAUAUAUCCCUUUAUUGAAGCUACCCUUCGUAAGAGAGAAUUUUGUAAUAUUAAUGAUGGUGAGAUUCAACUACUUCAACUGUUAUACCAUUCGUGAUCGUCUGAGAGAAUUA
Get precursor sequence
Structure
        10           20        30        40        50        60        70        80     
CAAAUAAUCACUGUUUU---|U        U           UU   UU   G    AACAAUAUAUCCCUUUAUUGAAGCUACCCU 
                    G GUGGUAUG ACAGUUGGAGU  UUG  UCU CACC                              \
                    C UACCAUAU UGUCAACUUCA  AAC  AGA GUGG                              U
AUUAAGAGAGUCUGCUAGUG^U        -           UC   UU   -    UAGUAAUUAUAAUGUUUUAAGAGAGAAUGC 
.       160       150        140       130       120        110       100        90
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
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Star sequence

Sma-Mir-1175_5p* (predicted)
mirBase accessionMIMAT0033631
Sequence 
0- AGUUGGAGUUUUUGUUUCUGCACC -24
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Mature sequence

Sma-Mir-1175_3p
mirBase accessionMIMAT0033632
Sequence 
87- UGAGAUUCAACUACUUCAACUGU -110
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