MirGeneDB 2.1
MirGeneDB ID

Efe-Mir-1175-P2

Family name MIR-1175 (all species)
Seed GAGAUUC
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1175-P1 
Orthologues Aae-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bpl-Mir-1175  Cgi-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Hme-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ovu-Mir-1175  Tca-Mir-1175 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)		 Efet.01.575070: 94-156 [-]
Precursor
(pre-Mir +30nt flank)
CCCUCUUCCUCCAAAGUCGGUCUGCGUUGUAGUGGAGAGAGCUCUAUCUCAUGAAACCUAGCAGAGCGUAUGAGAUUCAACUCCUCCAACUUCAGUCUAACCGACAAACAACACUAGAGGGCG
Get precursor sequence
Structure
        10           20        30         40        50        60 
CCCUCUUCCUCCAAAGU---|   C  CG   U   -    A   CUCU        AAACCUA 
                    CGGU UG  UUG AGU GGAG GAG    AUCUCAUG       \
                    GCCA AU  GAC UCA CCUC CUC    UAGAGUAU       G
GCGGGAGAUCACAACAAACA^   -  CU   U   A    -   AACU        GCGAGAC 
 120       110       100         90         80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut -3 relative to what is annotated here which results in a shifted Dicer cut as well.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-1175-P2_5p*
mirBase accessionNone
Sequence 
0- AGUGGAGAGAGCUCUAUCUCAUG -23
Get sequence
Mature sequence

Efe-Mir-1175-P2_3p
mirBase accessionNone
Sequence 
40- UGAGAUUCAACUCCUCCAACUUC -63
Get sequence