Mir-1175-P2

MirGeneDB ID

Efe-Mir-1175-P2

Family name

MIR-1175 (all species)

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-1175-P1

Orthologues

Aae-Mir-1175 Agr-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Eba-Mir-1175 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Mgi-Mir-1175 Mom-Mir-1175 Npo-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 War-Mir-1175

Node of Origin (locus)

E. fetida

Node of Origin (family)

Protostomia

Genome context
(Efe_combined)

Efet.01.575070: 94-156 [-]

Seed

GAGAUUC

Precursor
(pre-Mir +30nt flank)

CCCUCUUCCUCCAAAGUCGGUCUGCGUUGUAGUGGAGAGAGCUCUAUCUCAUGAAACCUAGCAGAGCGUAUGAGAUUCAACUCCUCCAACUUCAGUCUAACCGACAAACAACACUAGAGGGCG

Get precursor sequence

Structure

        10           20        30         40        50        60 
CCCUCUUCCUCCAAAGU---|   C  CG   U   -    A   CUCU        AAACCUA 
                    CGGU UG  UUG AGU GGAG GAG    AUCUCAUG       \
                    GCCA AU  GAC UCA CCUC CUC    UAGAGUAU       G
GCGGGAGAUCACAACAAACA^   -  CU   U   A    -   AACU        GCGAGAC 
 120       110       100         90         80        70

Deep sequencing

Go to detailed chart

Comment

There is a second Drosha cut -3 relative to what is annotated here which results in a shifted Dicer cut as well.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Efe-Mir-1175-P2_5p*

mirBase accession

None

Sequence

0- AGUGGAGAGAGCUCUAUCUCAUG -23

Get sequence

Mature sequence

Efe-Mir-1175-P2_3p

mirBase accession

None

Sequence

40- UGAGAUUCAACUCCUCCAACUUC -63

Get sequence