MirGeneDB ID | Npo-Mir-1175 |
---|---|
Family name | MIR-1175 (all species) |
Seed | GAGAUUC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | |
Orthologues | Aae-Mir-1175 Asu-Mir-1175 Bge-Mir-1175 Bpl-Mir-1175 Cgi-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Dya-Mir-1175-P3 Dya-Mir-1175-P4 Efe-Mir-1175-P1 Efe-Mir-1175-P2 Hme-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Lpo-Mir-1175-P5 Lpo-Mir-1175-P6 Lpo-Mir-1175-P7 Obi-Mir-1175 Ovu-Mir-1175 Sme-Mir-1175-P8 Sme-Mir-1175-P9 Tca-Mir-1175 |
Node of Origin (locus) | Protostomia |
Node of Origin (family) | Protostomia |
Genome context (GCA_018389105_NPO) |
JACATO010002729.1: 331909-331975 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AAUAAUUUAAAUACAGCCGGGUGUGUUUUGAAGUGGAGAGAGUUUUAUCUCAUCAUCUGCUGUUUCAUAUUGGGUGAGAUUCAACUCCUCCAACUGCAGAGUACAUUCACUCACUACCAUGACGUGGGet precursor sequence |
Structure | 10 20 30 40 50 60 AAUAAUUUAAAUACAGCC- A -| A UU AUCUGCUG GGGUGUGUUUUG AG UGGAG GAGUU AUCUCAUC U CUUACAUGAGAC UC ACCUC CUCAA UAGAGUGG U GGUGCAGUACCAUCACUCA G A^ - CU GUUAUACU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-1175_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AAGUGGAGAGAGUUUUAUCUCAUC -24
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|
Mature sequence | Npo-Mir-1175_3p (predicted) |
mirBase accession | None |
Sequence |
44- UGAGAUUCAACUCCUCCAACUGC -67
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|