| MirGeneDB ID | Npo-Mir-1175 |
|---|---|
| Family name | MIR-1175 (all species) |
| Species | Chambered Nautilus (Nautilus pompilius) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aae-Mir-1175 Aga-Mir-1175-v1 Agr-Mir-1175 Asu-Mir-1175 Ava-Mir-1175-P10 Ava-Mir-1175-P11 Bge-Mir-1175 Bko-Mir-1175 Bpl-Mir-1175 Cte-Mir-1175 Dan-Mir-1175 Dgr-Mir-1175 Dlo-Mir-1175 Dma-Mir-1175 Dme-Mir-1175 Dmo-Mir-1175 Dpu-Mir-1175 Dsi-Mir-1175 Dya-Mir-1175-P3 Dya-Mir-1175-P4 Eba-Mir-1175 Efe-Mir-1175-P1 Efe-Mir-1175-P2 Gpa-Mir-1175 Gsa-Mir-1175 Gsp-Mir-1175 Hme-Mir-1175 Hru-Mir-1175 Isc-Mir-1175 Lan-Mir-1175 Lgi-Mir-1175 Llo-Mir-1175 Lpo-Mir-1175-P5 Lpo-Mir-1175-P6 Lpo-Mir-1175-P7 Mgi-Mir-1175 Mom-Mir-1175 Obi-Mir-1175 Ofu-Mir-1175 Ovu-Mir-1175 Pau-Mir-1175 Pca-Mir-1175 Pcr-Mir-1175-P12-v1 Pcr-Mir-1175-P13 Pdu-Mir-1175 Pve-Mir-1175 Rph-Mir-1175 Sma-Mir-1175 Sme-Mir-1175-P8 Sme-Mir-1175-P9 Sne-Mir-1175 Snu-Mir-1175 Tca-Mir-1175 Tur-Mir-1175-v1 War-Mir-1175 |
| Node of Origin (locus) | Protostomia |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_018389105_NPO) |
JACATO010002729.1: 331909-331975 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-1175) |
Mir-1175
JACATO010002729.1: 331909-331975 [-]
Ensembl
Mir-750 JACATO010002729.1: 339392-339453 [-] Ensembl |
| Seed | GAGAUUC |
| Precursor (pre-Mir +30nt flank) |
AAUAAUUUAAAUACAGCCGGGUGUGUUUUGAAGUGGAGAGAGUUUUAUCUCAUCAUCUGCUGUUUCAUAUUGGGUGAGAUUCAACUCCUCCAACUGCAGAGUACAUUCACUCACUACCAUGACGUGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 AAUAAUUUAAAUACAGCC- A -| A UU AUCUGCUG GGGUGUGUUUUG AG UGGAG GAGUU AUCUCAUC U CUUACAUGAGAC UC ACCUC CUCAA UAGAGUGG U GGUGCAGUACCAUCACUCA G A^ - CU GUUAUACU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Npo-Mir-1175_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- AAGUGGAGAGAGUUUUAUCUCAUC -24
Get sequence
|
| Mature sequence | Npo-Mir-1175_3p (predicted) |
| mirBase accession | None |
| Sequence |
44- UGAGAUUCAACUCCUCCAACUGC -67
Get sequence
|
