MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-1175-P6

Family name MIR-1175 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1175-P5  Lpo-Mir-1175-P7 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013666035.1: 105989-106048 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1175-P6)		 Mir-750-P6 NW_013666035.1: 105196-105262 [+] Ensembl
Mir-1175-P6 NW_013666035.1: 105989-106048 [+] Ensembl
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
UGAAUUCAACGGGACUGUGGGGUGAGCUAGAAGUGGAGGGGUAGUCUCUUCACUUGGUUAAAAUAGUGAGAUUCAACUCCUCCAACUUGUAGCCUGUCUCACGAACCACCACUGCUUCCU
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Structure
        10          20        30         40          50        
UGAAUUCAACGGGACUG--    GU A    G   -         --|     UUCACUUGG 
                   UGGG  G GCUA AAG UGGAGGGGU  AGUCUC         \
                   ACUC  U CGAU UUC ACCUCCUCA  UUAGAG         U
UCCUUCGUCACCACCAAGC    UG C    G   A         AC^     UGAUAAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-1175-P6_5p*
mirBase accessionNone
Sequence 
0- AAGUGGAGGGGUAGUCUCUUC -21
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Mature sequence

Lpo-Mir-1175-P6_3p
mirBase accessionNone
Sequence 
36- UGAGAUUCAACUCCUCCAACUUGU -60
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