MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-1175-P5

Family name MIR-1175 (all species)
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-1175-P6  Lpo-Mir-1175-P7 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Protostomia
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013670786.1: 65078-65138 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-1175-P5)		 Mir-750-P5 NW_013670786.1: 64923-64986 [+] Ensembl
Mir-1175-P5 NW_013670786.1: 65078-65138 [+] Ensembl
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
CUCUUGAUAUUAUUAUUUGUGCUUUGGAAACAAGUGGAGAAGUGGUCUCCUCGCUUUGCUUGGAAAGUGAGAUUCAACUCCUCCAUUUUAUUCCCUGUCACAGCUAACUGCGACUUUACAG
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Structure
        10          20         30        40        50        60
CUCUUGAUAUUAUUAUU--    -|UUU    AC        A   GGUCUC      UUGC 
                   UGUG C   GGAA  AAGUGGAG AGU      CUCGCU    U
                   ACAC G   CCUU  UUUACCUC UCA      GAGUGA    U
GACAUUUCAGCGUCAAUCG    U^UC-    AU        C   ACUUA-      AAGG 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ge Ge So So So To
Star sequence

Lpo-Mir-1175-P5_5p*
mirBase accessionNone
Sequence 
0- CAAGUGGAGAAGUGGUCUCCUCGCU -25
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Mature sequence

Lpo-Mir-1175-P5_3p
mirBase accessionNone
Sequence 
37- UGAGAUUCAACUCCUCCAUUUUAU -61
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