MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-1175-P11

Family name MIR-1175 (all species)
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-1175-P10 
Orthologues Aae-Mir-1175  Agr-Mir-1175  Asu-Mir-1175  Bge-Mir-1175  Bko-Mir-1175  Bpl-Mir-1175  Cte-Mir-1175  Dan-Mir-1175  Dgr-Mir-1175  Dlo-Mir-1175  Dma-Mir-1175  Dme-Mir-1175  Dmo-Mir-1175  Dpu-Mir-1175  Dsi-Mir-1175  Eba-Mir-1175  Gpa-Mir-1175  Gsa-Mir-1175  Gsp-Mir-1175  Hme-Mir-1175  Hru-Mir-1175  Isc-Mir-1175  Lan-Mir-1175  Lgi-Mir-1175  Llo-Mir-1175  Mgi-Mir-1175  Mom-Mir-1175  Npo-Mir-1175  Obi-Mir-1175  Ofu-Mir-1175  Ovu-Mir-1175  Pau-Mir-1175  Pca-Mir-1175  Pdu-Mir-1175  Pve-Mir-1175  Rph-Mir-1175  Sma-Mir-1175  Sne-Mir-1175  Snu-Mir-1175  Tca-Mir-1175  War-Mir-1175 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075495.1: 8297250-8297312 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-1175-P11)		 Mir-1175-P11 CP075495.1: 8297250-8297312 [-] Ensembl
Mir-750-P9 CP075495.1: 8298204-8298264 [-] Ensembl
Novel-1 CP075495.1: 8323034-8323098 [+] Ensembl
Seed GAGAUUC
Precursor
(pre-Mir +30nt flank)		 
UUAUUCUCUAGUCGCAUACUCGACUCGACUAAGUGGAGCAGUUCGUCUCACCCUGAACACCAGCAAUUGGUGAGAUUCAACUCCUCCACUUCUUUGCAGUCGUUCAUAUCAACUCUUUCUUGU
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Structure
        10        20          30        40         50        60
UUAUUCUCUAGUCGCAUACU-     -   CU        C    C-|       CUGAACA 
                     CGACU CGA  AAGUGGAG AGUU  GUCUCACC       C
                     GCUGA GUU  UUCACCUC UCAA  UAGAGUGG       C
UGUUCUUUCUCAACUAUACUU     C   UC        C    CU^       UUAACGA 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To To
Star sequence

Ava-Mir-1175-P11_5p*
mirBase accessionNone
Sequence 
0- AAGUGGAGCAGUUCGUCUCACC -22
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Mature sequence

Ava-Mir-1175-P11_3p
mirBase accessionNone
Sequence 
40- UGAGAUUCAACUCCUCCACUUCU -63
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