Mir-10-P4

MirGeneDB ID

Bge-Mir-10-P4

Family name

MIR-10 (all species)

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-10-P1-v1 Bge-Mir-10-P2 Bge-Mir-10-P3

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(Bger_2.0)

KZ614729.1: 243285-243350 [+] Ensembl

Seed

AAGCUCG

Precursor
(pre-Mir +30nt flank)

CUCGUAUUAAAAUAAGGCACAUUCGUAAUCUACCCUGUAGAUCCGGGCUUUUGUAGAACCCCUGUAGAUAUCAGAAGCUCGUCUCUACAGGUAUCUUACGGAUGGGAGACCUCACACGUCCGAUGA

Get precursor sequence

Structure

        10           20        30        40        50        60  
CUCGUAUUAAAAUAAGGCA---|        UC    C      UC          UAGAACCC 
                      CAUUCGUAA  UACC UGUAGA  CGGGCUUUUG        C
                      GUAGGCAUU  AUGG ACAUCU  GCUCGAAGAC        U
AGUAGCCUGCACACUCCAGAGG^        CU    -      CU          UAUAGAUG 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Star sequence

Bge-Mir-10-P4_5p*

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGGGCUUUUG -23

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Mature sequence

Bge-Mir-10-P4_3p

mirBase accession

None

Sequence

43- GAAGCUCGUCUCUACAGGUAUCU -66

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