Mir-10-P1-v1

MirGeneDB ID

Bge-Mir-10-P1

Family name

MIR-10 (all species)

Species

Cockroach (Blattella germanica)

MiRBase ID

Paralogues

Bge-Mir-10-P2 Bge-Mir-10-P3 Bge-Mir-10-P4

Orthologues

Aae-Mir-10-P1-v1 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1c-v1 Aca-Mir-10-P1d-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1c-v1 Ami-Mir-10-P1d-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1c-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1c-v1 Cja-Mir-10-P1b-v1 Cja-Mir-10-P1c-v1 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1c-v1 Cli-Mir-10-P1d-v1 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1c-v1 Cmi-Mir-10-P1d-v1 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1c-v1 Cpi-Mir-10-P1d-v1 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1c-v1 Csc-Mir-10-P1q1-v1 Csc-Mir-10-P1q2-v1 Csc-Mir-10-P1q3-v1 Csc-Mir-10-P1r Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1c-v1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1d1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Ebu-Mir-10-P1e Ebu-Mir-10-P1f Eca-Mir-10-P1b-v1 Eca-Mir-10-P1c-v1 Efe-Mir-10-P1 Egr-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1c-v1 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1c-v1 Gga-Mir-10-P1d-v1 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1c-v1 Gja-Mir-10-P1d-v1 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1c1-v1 Gmo-Mir-10-P1c2-v1 Gmo-Mir-10-P1d1-v1 Gpa-Mir-10-P1 Gsa-Mir-10-P1o6 Gsa-Mir-10-P1o7 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hmi-Mir-10-P1a Hmi-Mir-10-P1b Hru-Mir-10-P1 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1c-v1 Isc-Mir-10-P1-v1 Laf-Mir-10-P1b Laf-Mir-10-P1c-v1 Lan-Mir-10-P1u Lan-Mir-10-P1v Lch-Mir-10-P1b Lch-Mir-10-P1c Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1c-v1 Loc-Mir-10-P1d-v1 Lpo-Mir-10-P1k-v1 Lpo-Mir-10-P1l-v1 Lpo-Mir-10-P1m-v1 Lpo-Mir-10-P1n-v1 Lpo-Mir-10-P1o-v1 Lpo-Mir-10-P1p-v1 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b2 Mal-Mir-10-P1c1-v1 Mal-Mir-10-P1c2a-v1 Mal-Mir-10-P1c2b-v1 Mal-Mir-10-P1d1-v1 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1c-v1 Mgi-Mir-10-P1 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1c-v1 Mmr-Mir-10-P1b-v1 Mmr-Mir-10-P1c-v1 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1c-v1 Mom-Mir-10-P1 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1c-v1 Mun-Mir-10-P1d-v1 Neu-Mir-10-P1b-v1 Neu-Mir-10-P1c-v1 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1c-v1 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1c-v1 Ofu-Mir-10-P1 Pab-Mir-10-P1b-v1 Pab-Mir-10-P1c-v1 Pau-Mir-10-P1 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1c-v1 Pbv-Mir-10-P1d-v1 Pca-Mir-10-P1 Pcr-Mir-10-P1o4-v1 Pcr-Mir-10-P1o5 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pma-Mir-10-P1o1 Pma-Mir-10-P1o2 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1c-v1 Rph-Mir-10-P1 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1c-v1 Sko-Mir-10-P1 Sma-Mir-10-P1 Sme-Mir-10-P1s Sme-Mir-10-P1t Snu-Mir-10-P1 Spt-Mir-10-P1b Spt-Mir-10-P1c Spu-Mir-10-P1 Sro-Mir-10-P1w Sro-Mir-10-P1x Sto-Mir-10-P1b-v1 Sto-Mir-10-P1c-v1 Tca-Mir-10-P1-v1 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1c-v1 Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1d1-v1 Tur-Mir-10-P1y Tur-Mir-10-P1z-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1b3-v1 Xla-Mir-10-P1b4-v1 Xla-Mir-10-P1c3-v1 Xla-Mir-10-P1c4-v1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1c-v1 Xtr-Mir-10-P1d-v1

Node of Origin (locus)

Bilateria

Node of Origin (family)

Eumetazoa

Genome context
(Bger_2.0)

KZ614729.1: 496542-496599 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1-v1)

Mir-10-P1-v2 KZ614729.1: 496541-496600 [-] Ensembl
Mir-10-P1-v1 KZ614729.1: 496542-496599 [-] Ensembl

Variant

Bge-Mir-10-P1-v1

Seed

CCCUGUA

Precursor
(pre-Mir +30nt flank)

UCACCAGCACAGAAGUAAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUUUGACAUUGGGCGACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACAAUGCAACGUGCAACCA

Get precursor sequence

Structure

        10          20        30         40        50        
UCACCAGCACAGAAGUA--    U      CU   -| G    U           UGACA 
                   AUGC CUACAU  ACC CU UAGA CCGAAUUUGUU     \
                   UACG GGUGUG  UGG GA AUCU GGCUUAAACAG     U
ACCAACGUGCAACGUAACA    U      UU   A^ G    U           CGGGU 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Mature sequence

Bge-Mir-10-P1-v1_5p

mirBase accession

None

Sequence

0- ACCCUGUAGAUCCGAAUUUGUU -22

Get sequence

Star sequence

Bge-Mir-10-P1-v1_3p*

mirBase accession

None

Sequence

35- CAAAUUCGGUUCUAGAGAGGUUU -58

Get sequence

Variant

Bge-Mir-10-P1-v2

Seed

ACCCUGU

Precursor
(pre-Mir +30nt flank)

GUCACCAGCACAGAAGUAAUGCUCUACAUCUACCCUGUAGAUCCGAAUUUGUUUGACAUUGGGCGACAAAUUCGGUUCUAGAGAGGUUUGUGUGGUGCAUACAAUGCAACGUGCAACCAA

Get precursor sequence

Structure

        10          20        30         40        50         
GUCACCAGCACAGAAGUA--    U      CU   -| G    U          UUGACA 
                    AUGC CUACAU  ACC CU UAGA CCGAAUUUGU      \
                    UACG GGUGUG  UGG GA AUCU GGCUUAAACA      U
AACCAACGUGCAACGUAACA    U      UU   A^ G    U          GCGGGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Ad	Co	Co	Di	Di	Eg	Eg	Em	Em	Em	Em	Em	Em	Em	Em	Em	Em	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ny	Ov

Mature sequence

Bge-Mir-10-P1-v2_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGAAUUUGU -22

Get sequence

Star sequence

Bge-Mir-10-P1-v2_3p*

mirBase accession

None

Sequence

37- AAAUUCGGUUCUAGAGAGGUUUG -60

Get sequence