| MirGeneDB ID | Gga-Mir-10-P1d |
|---|---|
| Family name | MIR-10 (all species) |
| Species | Chicken (Gallus gallus) |
| MiRBase ID | |
| Paralogues | Gga-Mir-10-P1b-v1 Gga-Mir-10-P1c-v1 Gga-Mir-10-P2c Gga-Mir-10-P2d Gga-Mir-10-P3c Gga-Mir-10-P3d |
| Orthologues | Aae-Mir-10-P1-v1 Aca-Mir-10-P1d-v1 Adi-Mir-10 Aga-Mir-10-P1-v1 Agr-Mir-10-P1 Ami-Mir-10-P1d-v1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bge-Mir-10-P1-v1 Bla-Mir-10-P1-v1 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cli-Mir-10-P1d-v1 Cmi-Mir-10-P1d-v1 Cpi-Mir-10-P1d-v1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dma-Mir-10-P1-v1 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dre-Mir-10-P1d1-v1 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gja-Mir-10-P1d-v1 Gmo-Mir-10-P1d1-v1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Lch-Mir-10-P1d Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Loc-Mir-10-P1d-v1 Mal-Mir-10-P1d1-v1 Mgi-Mir-10-P1 Mom-Mir-10-P1 Mun-Mir-10-P1d-v1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pbv-Mir-10-P1d-v1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tni-Mir-10-P1d1-v1 War-Mir-10-P1 Xbo-Mir-10-P1 Xla-Mir-10-P1d3-v1 Xla-Mir-10-P1d4-v1 Xtr-Mir-10-P1d-v1 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Eumetazoa |
| Genome context (Gallus_gallus.GRCg6a) |
|
| Variant | Gga-Mir-10-P1d-v1 |
| Seed | ACCCUGU |
| Precursor (pre-Mir +30nt flank) |
UACCCUGUAGACUCGAAUUUGUGUGAGCGUCUCCGAGUCGCAAAUUCGUCUCUAGGGGAAUAGet precursor sequence |
| Structure | 10 20 30 UAC-| G CU UGAG U CCU UAGA CGAAUUUGUG CG C GGG AUCU GCUUAAACGC GC U AUAA^ G CU UGA- C 60 50 40 |
| Deep sequencing | |
| Comment | There is a one nt deletion in the 3p read in the genome sequence relative to what is shown here. However both the read data and phylogenetic conservation suggest that this is the correct sequence. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Gga-Mir-10-P1d-v1_5p |
| mirBase accession | None |
| Sequence |
0- UACCCUGUAGACUCGAAUUUGU -22
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|
| Star sequence | Gga-Mir-10-P1d-v1_3p* |
| mirBase accession | None |
| Sequence |
41- AAAUUCGUCUCUAGGGGAAUA -62
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|
| Variant | Gga-Mir-10-P1d-v2 |
| Seed | CCCUGUA |
| Precursor (pre-Mir +30nt flank) |
ACCCUGUAGACUCGAAUUUGUGUGAGCGUCUCCGAGUCGCAAAUUCGUCUCUAGGGGAAUGet precursor sequence |
| Structure | 10 20 30 AC-| G CU UGAG U CCU UAGA CGAAUUUGUG CG C GGG AUCU GCUUAAACGC GC U UAA^ G CU UGA- C . 50 40 |
| Deep sequencing | |
| Comment | There is a one nt deletion in the 3p read in the genome sequence relative to what is shown here. However both the read data and phylogenetic conservation suggest that this is the correct sequence. |
| 3' NTU | No |
| Motifs | No |
| Mature sequence | Gga-Mir-10-P1d-v2_5p |
| mirBase accession | None |
| Sequence |
0- ACCCUGUAGACUCGAAUUUGUG -22
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|
| Star sequence | Gga-Mir-10-P1d-v2_3p* |
| mirBase accession | None |
| Sequence |
39- CAAAUUCGUCUCUAGGGGAAU -60
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|
