MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-10-P1d-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1c-v2  Loc-Mir-10-P1d-v2  Loc-Mir-10-P2c  Loc-Mir-10-P2d  Loc-Mir-10-P3b  Loc-Mir-10-P3c  Loc-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1d-v1  Aca-Mir-10-P1d-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cgi-Mir-10-P1  Cli-Mir-10-P1d-v1  Cli-Mir-10-P1d-v2  Cmi-Mir-10-P1d-v1  Cmi-Mir-10-P1d-v2  Cpi-Mir-10-P1d-v1  Cpi-Mir-10-P1d-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Gga-Mir-10-P1d-v1  Gga-Mir-10-P1d-v2  Gja-Mir-10-P1d-v1  Gja-Mir-10-P1d-v2  Gmo-Mir-10-P1d1-v1  Gmo-Mir-10-P1d1-v2  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lch-Mir-10-P1d  Lgi-Mir-10-P1  Mal-Mir-10-P1d1-v1  Mal-Mir-10-P1d1-v2  Mun-Mir-10-P1d-v1  Mun-Mir-10-P1d-v2  Npo-Mir-10-P1  Nve-Mir-10  Pbv-Mir-10-P1d-v1  Pbv-Mir-10-P1d-v2  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Sko-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tni-Mir-10-P1d1-v1  Tni-Mir-10-P1d1-v2  Xla-Mir-10-P1d3-v1  Xla-Mir-10-P1d3-v2  Xla-Mir-10-P1d4-v1  Xla-Mir-10-P1d4-v2  Xtr-Mir-10-P1d-v1  Xtr-Mir-10-P1d-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(LepOcu1)		 LG4: 15933791-15933851 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUUCCUACCCUCAUCAGUCGUCUAUAUGUACCCUGUAGAACCGAAUUUGUGUGAGCAGCAAAAAUCGCAAAUUCGUCUCUAGGGGAAUACAUGGGCGAUGCCAAUACCGCAGUGGCACG
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Structure
        10          20        30        40        50        60
ACUUUCCUACCCUCAUCA--|        A   A    G    AC          UGAGCA 
                    GUCGUCUAU UGU CCCU UAGA  CGAAUUUGUG      G
                    UAGCGGGUA AUA GGGG AUCU  GCUUAAACGC      C
GCACGGUGACGCCAUAACCG^        C   A    -    CU          UAAAAA 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-10-P1d-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAACCGAAUUUGUG -23
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Star sequence

Loc-Mir-10-P1d-v1_3p*
mirBase accessionNone
Sequence 
39- CAAAUUCGUCUCUAGGGGAAUA -61
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