MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-10-P3c

Family name MIR-10 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-10-P1b-v1  Loc-Mir-10-P1c-v1  Loc-Mir-10-P1d-v1  Loc-Mir-10-P2c  Loc-Mir-10-P2d  Loc-Mir-10-P3b  Loc-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3c  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cin-Mir-10-P3  Cja-Mir-10-P3c  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3c  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gmo-Mir-10-P3c2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Laf-Mir-10-P3c  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Mal-Mir-10-P3c2  Mdo-Mir-10-P3c  Mgi-Mir-10-P3  Mml-Mir-10-P3c  Mmr-Mir-10-P3c  Mmu-Mir-10-P3c  Mom-Mir-10-P3  Mun-Mir-10-P3c  Nag-Mir-10-P3-v1  Neu-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3c  Pau-Mir-10-P3  Pbv-Mir-10-P3c  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3c  Rph-Mir-10-P3  Sha-Mir-10-P3c  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xtr-Mir-10-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(LepOcu1)		 LG3: 67031-67092 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3c)		 Mir-10-P3c LG3: 67031-67092 [-] Ensembl
Let-7-P1c LG3: 87762-87828 [-] Ensembl
Mir-10-P2c LG3: 90360-90418 [-] Ensembl
Seed CCCUGAG
Precursor
(pre-Mir +30nt flank)		 
CUCGAGUGGAUAUUGCUGUACUUCUCCUAUUCCCUGAGACCCUAACUUGUGAGCUCUUUCAAUUAAAAUCACGGGUUAGGCUCUUGGGACCUGGGCGGAGGGCACAAGCGGCUCUGGACAUC
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Structure
        10          20        30         40        50        60
CUCGAGUGGAUAUUGCU-- UA    U    U-|   U    C            GCUCUUU 
                   G  CUUC CCUA  UCCC GAGA CCUAACUUGUGA       C
                   C  GAGG GGGU  AGGG UUCU GGAUUGGGCACU       A
CUACAGGUCUCGGCGAACA GG    C    CC^   -    C            AAAAUUA 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-10-P3c_5p
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Loc-Mir-10-P3c_3p*
mirBase accessionNone
Sequence 
40- ACGGGUUAGGCUCUUGGGACCU -62
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