Mir-10-P3c

MirGeneDB ID

Sha-Mir-10-P3c

Family name

MIR-10 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

sha-mir-125b

Paralogues

Sha-Mir-10-P1b-v1 Sha-Mir-10-P1c-v1 Sha-Mir-10-P2b Sha-Mir-10-P2c Sha-Mir-10-P2d Sha-Mir-10-P3b Sha-Mir-10-P3d

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3c Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3c Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3c Cfa-Mir-10-P3c Cin-Mir-10-P3 Cja-Mir-10-P3c Cli-Mir-10-P3c Cpi-Mir-10-P3c Cpo-Mir-10-P3c Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3c Dpu-Mir-10-P3 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3c Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3c Gga-Mir-10-P3c Gja-Mir-10-P3c Gmo-Mir-10-P3c2 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3c Isc-Mir-10-P3 Laf-Mir-10-P3c Lan-Mir-10-P3 Lch-Mir-10-P3c Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3c Mal-Mir-10-P3c2 Mdo-Mir-10-P3c Mgi-Mir-10-P3 Mml-Mir-10-P3c Mmr-Mir-10-P3c Mmu-Mir-10-P3c Mom-Mir-10-P3 Mun-Mir-10-P3c Nag-Mir-10-P3-v1 Neu-Mir-10-P3c Nve-Mir-10 Oan-Mir-10-P3c Obi-Mir-10-P3 Ocu-Mir-10-P3c Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3c Pau-Mir-10-P3 Pbv-Mir-10-P3c Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3c Rph-Mir-10-P3 Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3c Spu-Mir-10-P3 Sto-Mir-10-P3c Tca-Mir-10-P3 Tgu-Mir-10-P3c War-Mir-10-P3 Xbo-Mir-10-P3 Xla-Mir-10-P3c3 Xla-Mir-10-P3c4 Xtr-Mir-10-P3c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Eumetazoa

Genome context
(DEVIL_add)

GL850548.1: 23535-23596 [+] UCSC Ensembl

Seed

CCCUGAG

Precursor
(pre-Mir +30nt flank)

UUCUACUGCAUCAAAUAAGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGAUUUUUUAGCAAUAAUCACAGGUCAGGCUCUUGGGACCUAGGCGGAGGGGAACCAGCAGCUCUGGACUA

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Structure

        10        20          30        40        50        60
UUCUACUGCAUCAAAUAAGA--|  UU     UC  UG   C   A        GAUUUUU 
                      CUU  CCUAG  CC  AGA CCU ACUUGUGA       U
                      GAG  GGAUC  GG  UCU GGA UGGACACU       A
AUCAGGUCUCGACGACCAAGGG^  GC     CA  GU   C   C        AAUAACG 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-10-P3c_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Star sequence

Sha-Mir-10-P3c_3p*

mirBase accession

MIMAT0022810

Sequence

40- ACAGGUCAGGCUCUUGGGACCU -62

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