MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-10-P3c

Family name MIR-10 (all species)
Seed CCCUGAG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-125b-2
Paralogues Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Ami-Mir-10-P1c-v1  Ami-Mir-10-P1c-v2  Ami-Mir-10-P1d-v1  Ami-Mir-10-P1d-v2  Ami-Mir-10-P2b  Ami-Mir-10-P2c  Ami-Mir-10-P2d  Ami-Mir-10-P3b  Ami-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gmo-Mir-10-P3c2  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Loc-Mir-10-P3c  Mal-Mir-10-P3c2  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mmu-Mir-10-P3c  Mun-Mir-10-P3c  Nve-Mir-10  Oan-Mir-10-P3c  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ovu-Mir-10-P3  Pbv-Mir-10-P3c  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xbo-Mir-10-P3  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xtr-Mir-10-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017713645.1: 37281665-37281726 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-10-P3c)
Mir-10-P2c NW_017713645.1: 37234796-37234854 [+] UCSC
Let-7-P1c NW_017713645.1: 37235566-37235632 [+] UCSC
Mir-10-P3c NW_017713645.1: 37281665-37281726 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUCUACUGGAUCACAUUGGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGGUUUUUUAGCAACAAUCACAAGUCAGGCUCUUGGGACCUAGGCGGAGGGGAACCAGCAGCUUUGGACUU
Get precursor sequence
Structure
        10        20          30        40        50        60
UUCUACUGGAUCACAUUGGA--|  UU     UC  UG   C   A        GGUUUUU 
                      CUU  CCUAG  CC  AGA CCU ACUUGUGA       U
                      GAG  GGAUC  GG  UCU GGA UGAACACU       A
UUCAGGUUUCGACGACCAAGGG^  GC     CA  GU   C   C        AACAACG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Ami-Mir-10-P3c_5p

mirBase accessionMIMAT0038128
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
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Star sequence

Ami-Mir-10-P3c_3p*

mirBase accessionMIMAT0038130
Sequence
40- ACAAGUCAGGCUCUUGGGACCU -62
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